Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 >seq6 Length=2185627 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || ||||| | ||||| || || || || || Sbjct 20431 GTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 20372 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 20371 GCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATC-TTGCTCTT 20313 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||||||| || ||||| || ||||| ||||| || || || || Sbjct 20312 CACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGT 20253 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 20252 CTTCACAAAGATCTGCATT 20234 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||| || || ||||| || || || | ||| || Sbjct 20674 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCC 20615 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| || |||||||| || || || || ||| Sbjct 20614 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 20555 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || ||||| || | || ||| | || ||||| || || || ||| Sbjct 20554 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 20495 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 20494 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397972183532