Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 161 2e-35 seq10 109 9e-20 >seq3 Length=3502833 Score = 161 bits (178), Expect = 2e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| |||||||| ||||| ||||| |||||| Sbjct 2387151 CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGCCGTGGT 2387210 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 2387211 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 2387270 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || | || ||| ||||||||||| || || ||||| ||| Sbjct 2387271 CTCGAGAACGTGATCCGCGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTC 2387330 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||||| || | || || || ||||| | | || ||||| || Sbjct 2387331 ACCTCGCTCGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 2387389 >seq10 Length=842962 Score = 109 bits (120), Expect = 9e-20 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| || ||||| ||||| || || |||||| Sbjct 412268 CTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGCCGTGGT 412209 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| |||| |||| | ||||||||| Sbjct 412208 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTC 412149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075173485097