Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 >seq6 Length=2185627 Score = 131 bits (144), Expect = 2e-25 Identities = 277/411 (67%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 94809 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 94750 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 94749 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 94690 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGT 33480 || || || || || |||||||| ||||| | ||| || | || | | ||||| Sbjct 94689 ATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAA 94630 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || | ||||| ||||||||||| || | || || || | || || || || Sbjct 94629 ATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTG 94570 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || |||| | | || || || || ||||| | || ||| | Sbjct 94569 AACAGGTAGTGGCGGCGCGCATTGTCGCGAATGTACGTGTCGATGAGGAGCGAGTACGTC 94510 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| |||||||| || || ||||| || |||||||| | ||||||| |||| Sbjct 94509 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATC 94450 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || || || || || || || | | || || || || || |||||| Sbjct 94449 TGCACCTCACCGCAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCA 94399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946974181640