Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 374 2e-98 >seq5 Length=2501492 Score = 374 bits (414), Expect = 2e-98 Identities = 1127/1731 (65%), Gaps = 38/1731 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || ||||| ||| | |||||||| |||||||||||||| || | |||| Sbjct 909614 GAGCGTCCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAACATTGAG 909555 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 | | | || || || || || | | ||| ||||| ||||| ||||||| Sbjct 909554 AAGGTGCTCGACACGTACAACCTCATGTCGGAGCGTTACTTCACCCACGCGTCGCCAACC 909495 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | ||| || || || | | || |||||||| || |||||||| | |||||| Sbjct 909494 CTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGCCATGAAG 909435 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 ||||| || || || || |||| ||||| || |||| || |||| || ||||||| | Sbjct 909434 GACGACTCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACT 909375 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGC 363747 || || || || ||| | |||||||| |||| || || | |||||| ||| Sbjct 909374 GCTGGTGGTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTACATTGCCGGT 909315 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || |||||||| || | || |||||||| || | | ||| ||||| | Sbjct 909314 ACCAACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCCACTGCCCGT 909255 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 |||||||||||||| || |||||| || ||||| || || || ||||||||| Sbjct 909254 TACGTCGACCAGGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGG 909195 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || ||||| | || || || || || ||||| || ||| || || ||||| | || Sbjct 909194 CACGCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGC 909135 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || || ||| | | |||| ||| |||||||| || ||||| Sbjct 909134 GCTCGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGGCC 909075 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 | | ||| | ||| | ||||| ||| || || ||||| |||| || Sbjct 909074 GACGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACTCG 909015 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | || || ||||| | || || | | || |||| ||| ||||| || Sbjct 909014 GAGGAGTTTGAGAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCGCAAGACCATC 908955 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || |||||||| |||||||||||| | || | |||| ||||| || |||| Sbjct 908954 AAGGCCCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTGGTCCCTTC 908895 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| | ||||| || | |||| |||||||||||||||||||||| || || || || Sbjct 908894 ATGCTCTACAAGGACGCTGCCAACAGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAG 908835 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 | |||||| || || ||||| || || ||| | || ||||||||| ||||| || Sbjct 908834 TCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGC 908775 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AGA-----TGGTACTTTTGA 364337 ||||| || ||||| || || || |||||||| | ||| | |||| || Sbjct 908774 AACCTGGCCTCGATTGCCCTCCCTGCGTTTGTCGACATTGAGAGCCAGTCGTAC----GA 908719 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | || | || | || | ||| | || || || |||||| |||| ||| Sbjct 908718 CTTTAAGAAGCTGCACGAGATCACCAAGGTTGTGACCAAGAACCTCGACCAGGTCATCAC 908659 Query 364398 CAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCG 364452 |||||| || || || | || || || ||| || ||||| || ||||| Sbjct 908658 CAAGAACTACTACCCCGTCGAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCC 908604 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGAT 364512 | ||||| || || || || || || ||| || ||| ||| ||| | || || Sbjct 908603 GTCGGTCTCGGCGTGCAAGGTCTTGCCGACACCTTCATGGCTCTCCGCATGCCCTTCGAC 908544 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT- 364571 ||||||| ||| |||| || || |||||||||| || || || || || | Sbjct 908543 TCGCCTGCCGCCCGTGAGCTTAACCTCAAGATCTTTGAGACCATCTACCACGCTGCCCTC 908484 Query 364572 GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCC 364631 || | | ||||| || |||| | || |||||| | || || ||||| || || Sbjct 908483 GAGT-CGTCGTGCGAGATGGCCCAGGAGTTTGGCAAGTACCCCACCTACGAGGGCTCGCC 908425 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCATCTGTCCGATG 364688 | | |||||||| || |||| || || ||| ||| ||| | | || || Sbjct 908424 TATCTCGCAGGGTAAGCTCCAACCCGACCTCTGGGGCCGTGT---GCCCACCGACCTCTG 908368 Query 364689 GAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | ||||| ||| || ||||| | |||| ||| |||||||| ||| || Sbjct 908367 GGACTGGACCGAGCTCCGCGCCAACATCGCTCAGCACGGTGTCCGCAACTCGCTCCTTGT 908308 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 |||||||||||||| || || || | |||||||| || |||||||||||||| || Sbjct 908307 CGCGCCCATGCCCACTGCCTCGACCTCGCAGATCCTTGGCTGGAACGAGTGCTTCGAGCC 908248 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | || | || || | ||||| || || || || || || | ||| || Sbjct 908247 CTACACCTCGATGCTCTACGCTCGCCGTGTGCTCTCGGGTGACTTCCAGGTCGTCTGCCC 908188 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | || || || || | ||| || | |||| || |||||||||| || Sbjct 908187 CTGGCTCCTCCGTGACCTCATCAACCTGGGCATCTGGGACGAGGACATGAAGAACCTCAT 908128 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 ||| ||| | ||| || | ||| ||||||| ||||||| || || ||| | || Sbjct 908127 CATTGCCTCCGGTGGCTCGATCCAGCACATTCCCAACATTCCAGATGAGCTCAAGGCAAT 908068 Query 364989 TTACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCG 365045 |||||| || || ||||| | || || ||| || ||||||| | |||||||| || Sbjct 908067 TTACAAGACTGTTTGGGAGGTGTCGCA---GAAGGCTGTCATTGACCTTGCGGCCGACCG 908011 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105 || || || ||| ||| |||||| | ||| | | || | | || | | | | Sbjct 908010 TGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTTCGTTCTC 907951 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| || || ||||| |||||||| ||||| ||| || ||||| || Sbjct 907950 GCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGACTCAAGACTGG 907900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353115722678