Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 seq2 114 1e-20 seq3 87.8 2e-12 >seq6 Length=2185627 Score = 141 bits (156), Expect = 9e-29 Identities = 332/494 (67%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| ||||||||||| | || ||||| || | | || | || ||||||||| Sbjct 94601 AAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGACAAGAACTCGTCGTTTGCCGAGCGT 94660 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | |||||||| || |||||| |||| || || ||| |||||| ||||||| Sbjct 94661 CTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTC 94720 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | |||||||||| || || || ||||||||| || ||||| Sbjct 94721 TGGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCG 94779 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337 ||||||||| || || || |||||||| || || || ||| | | | | | | Sbjct 94780 CGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCT---TCACCCACCTCCGCCGCCG 94836 Query 46338 GCTTGCGCCCGACACCGTGCTGAGCATGTTCA---AGGAGGCGGTGGCCATTGAGAAGGA 46394 | | || |||||| | | |||| ||| ||||| || || || ||| | || Sbjct 94837 CCCTCACCCAGACACC---ATCAACATGATCATCCGCGAGGCCGTTGCGATCGAGCAAGA 94893 Query 46395 GTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGA 46454 ||| | || | ||| || |||| | || | ||||||||||| | |||||| | Sbjct 94894 GTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCGCGCTCATGTGCCA 94953 Query 46455 CTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTC- 46513 ||||| |||||||| || ||||| |||||||| || || || | | |||| | Sbjct 94954 GTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGCGC-TCGGCAACGACAAGATTTACA 95012 Query 46514 ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTT 46573 || | || ||||| || |||||| | | ||||| || ||||||| | || || | Sbjct 95013 ACTCTGCAAACCCATTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCAAACTTCT 95072 Query 46574 TCGAAAAGCGCGTC 46587 |||| ||||||| Sbjct 95073 TCGAGTCGCGCGTC 95086 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | || |||||||| ||||||||||| || | Sbjct 20461 CCACCACGCAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAC 20402 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 20401 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 20342 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || ||| | ||||||| Sbjct 20341 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACC 20282 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| || || || || || |||||||| Sbjct 20281 TCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 20235 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | || | ||||||||||| || |||||||| ||| | Sbjct 20689 CCCCCGCGGAGACGGAGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20630 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 20629 AGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 20570 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || |||| ||||||| Sbjct 20569 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACC 20510 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| || || || ||||| |||||||| Sbjct 20509 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| || | || | || |||||||| || |||||||| || Sbjct 20233 CCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 20174 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 20173 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGG 20114 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 20113 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 20054 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| || ||||| || Sbjct 20053 TCGAGGGTGATGGTCTTTCCGGTCAG 20028 >seq2 Length=3675159 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| || Sbjct 2842967 CCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2843026 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 2843027 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGG 2843086 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | |||||||| Sbjct 2843087 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 2843146 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 || | ||| | ||| || || || || Sbjct 2843147 TCAAGGGTGATGGTCTTGCCCGTGAG 2843172 >seq3 Length=3502833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 46176 TGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGG 46234 ||| ||||| |||| ||||||||| || || |||||||| | | || || | || Sbjct 1064911 TGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTGAAGAAGCGCGG 1064970 Query 46235 GCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATA 46294 | |||||| ||||| || || ||||||||| || ||||||||||||||| |||| Sbjct 1064971 AC-TCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCACACATA 1065029 Query 46295 CGGACTTTGCGTGTCTC 46311 | |||||||| |||||| Sbjct 1065030 CCGACTTTGCCTGTCTC 1065046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012628895360