Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 >seq6 Length=2185627 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| | || || | ||||||| | || Sbjct 20437 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGC 20378 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 ||||| ||| | ||||| ||||| ||||| || | ||||| ||||| ||| ||| Sbjct 20377 TTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTG 20318 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || |||||| | | | | ||||||| | ||| || | || || || |||||||| Sbjct 20317 CT-CTTCACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGT 20259 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| ||||||||| Sbjct 20258 GAGGGTCTTCACAAAGATCTGCATT 20234 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| || || | ||||| | || Sbjct 20665 TGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGC 20606 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || ||||| ||||| ||| | |||||| ||||| ||| | | Sbjct 20605 TTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTC 20546 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||| || || ||||| Sbjct 20545 GACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTG 20486 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 20485 AGGGTCTTGACGAAGATCTGCAT 20463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087856826710