Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 >seq6 Length=2185627 Score = 129 bits (142), Expect = 7e-25 Identities = 285/419 (68%), Gaps = 10/419 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 94810 GCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 94751 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || ||||| || || || || Sbjct 94750 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAA 94691 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269 || || || ||||| ||||| || | || ||| |||||||| | || || || | Sbjct 94690 GATGCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAA---CGACGAGTTCTTGTC 94634 Query 93270 TG--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAG 93326 | ||||| || | ||||| ||||| || ||||| || | ||| | |||| || || | Sbjct 94633 AGAAATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGC-AGGGAATGTTCTCAATCG 94575 Query 93327 CGTTAAATAGGTAATCTC-GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 |||| || ||||| | | || || | || || ||||| || ||||| | || || Sbjct 94574 CGTTGAACAGGTAGTGGCGGCGCG-CATTGTCGCGAATGTACGTGTCGATGAGGAGCGAG 94516 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||| | || || || | |||||||| || ||||| |||||||| | || || Sbjct 94515 TACGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCG 94456 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | |||||||| || | || | ||| || || || || ||||| || || || || Sbjct 94455 GGAATCTGCACCTCACCGCAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGA 94397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860598137960