Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 136 8e-27 seq2 136 8e-27 seq4 116 8e-21 >seq3 Length=3502833 Score = 136 bits (150), Expect = 8e-27 Identities = 435/667 (65%), Gaps = 22/667 (3%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || ||||||||||||||||||||||| | ||| | || || || || | ||||| Sbjct 2444143 TCGCTCTCGGGTGGTTGGAAGATGAAGCTCGAGCTCGCGCGTGCGATGCTTATCGGTGCC 2444202 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || |||||||| || |||||| | ||| | | ||| || ||||| Sbjct 2444203 GACATTCTCCTCCTCGATGAGCCGACTAACCACTTAGACGTCCAGACCGTCGCGTGGCTC 2444262 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| |||| || | | | | ||| || ||||| |||||||||||| Sbjct 2444263 GAGGACTACCTCACCAACCTTCCTCAGATGACCTGCCTGATCGTCTCGCACGACTCTGGC 2444322 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || ||| ||| | | ||| || ||||| ||| || ||||||| | | Sbjct 2444323 TTCCTTGACAACGTCTGCACGGACATTATCCACTACGAGAGCAA---GAAGCTCGTCTAC 2444379 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCG-CCCTGAGGCGGCCGCCTACTATGA 280000 ||| ||||||||||| || || | | ||| ||| ||||| | ||||| Sbjct 2444380 TACAAGGGCAACCTGTCCAAGTTTGTCG-AGCGCGTCCCCGAGGCCAAGTCGTACTACAC 2444438 Query 280001 CCTGAAGGACGCCACCGC---CAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCAT 280057 ||| | ||||||| | ||||| |||||| || || | || | || | Sbjct 2444439 CCT---CGCCGCCACCTCGATCAAGTTCACCTTCCCTCCTCCCGGTTCGCTTGTCGGTGT 2444495 Query 280058 CACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGG 280117 || || || || || | |||||| || | |||| | || || || Sbjct 2444496 GCGCTCCAACACCCGTGCCATTCTCAAGCTCTCCAACGCCACCTTCACCTACCCAGGTGC 2444555 Query 280118 CCCCAA------CATCTTCAGCAGTG-TCAACTCGCAGGTTTCTATGAACTCACGGATTG 280170 | |||| ||||| | | ||| | ||||| |||| || || || | | Sbjct 2444556 CGCCAAGCCGTCCATCTCGAAC-GTGACCTGCTCGC---TTTCGCTGTCGTCGCGTGTCG 2444611 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 || || |||| ||||| ||||| |||||| |||||| ||||| |||| |||||||||| Sbjct 2444612 GTATCGTTGGTCCCAACGGTGCCGGTAAGAGTACCCTCATCAAGCTCCTCACTGGCGAGA 2444671 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || || ||||| || || ||||| ||| | || | | |||||||||| Sbjct 2444672 CCATTCCCCAGGAGGGCTCGGTGCACAAGCACCCCGCGCTCCGTGTCGGCTACGTCGCTC 2444731 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 | || || |||||||||||| | ||||| |||| |||| | || ||||| |||| Sbjct 2444732 AACATGCGTTCCACCACATCAACCTGCACCTCGACAAGACTGCCGTGCAGTACATCCAGT 2444791 Query 280351 GGCGCTA 280357 |||| || Sbjct 2444792 GGCGTTA 2444798 >seq2 Length=3675159 Score = 136 bits (150), Expect = 8e-27 Identities = 230/327 (70%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 218503 AACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTG 218562 || |||||| ||| ||||| || |||||||||| || || ||||| | || Sbjct 3085524 AAGATCCCCATCCAGGACTTTGTCAACAAGGAGCTTATCCTGTTCTCCATGGCCGACAAC 3085465 Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 ||||| |||||| || | ||| ||||||||||| ||||| ||| | | ||| Sbjct 3085464 ATCCGTTCCATTCCCTCGGTCGCGGACGGCCTCAAGCCCGGTCAGCGCAAGGTGATGTTT 3085405 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 || |||||||| ||||| || || || |||||||| ||| | ||||||||| Sbjct 3085404 GCGTGCTTCAAGCGCAACCTCAAGCAGGAGATCAAGGTCGCCCAGCTCGGTGGTTATGTC 3085345 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGT-CTGCAGGGTG-CCATTGTAGGCA 218740 || || | ||| |||||| |||||||| || || | | || ||||||| || Sbjct 3085344 TCTGAGAACACTGCCTACCACCACGGTGA--AGCGTCCCTCGTCATGACCATTGTCGGTC 3085287 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTC-CCCAACGGTCAGTTT 218799 | || || |||| |||||||| |||||||| ||| | || ||| |||||||||||||| Sbjct 3085286 TCGCTCAAAACTACGTGGGCAGCAACAACATCAACCTCCT-CTCGCCCAACGGTCAGTTC 3085228 Query 218800 GGTTCTCGTCTATTGGGTGGAAAGGAT 218826 ||| | ||| | |||||| |||||| Sbjct 3085227 GGTACGCGTATCCAGGGTGGCAAGGAT 3085201 >seq4 Length=3284570 Score = 116 bits (128), Expect = 8e-21 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| |||| ||||| || || |||| |||| || ||||||||| Sbjct 2356569 GTCCTTGGTCCCAACGGTTCGGGCAAGTCGACTCTCGTCAAGCTCCTTACCGGCGAGACC 2356510 Query 280233 CAGGCCA--CTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| || | ||| |||| |||||||| || ||| | || | |||||| || Sbjct 2356509 GAGCCCAACCTCGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCC 2356450 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||||||||||||||||| | ||||| ||| |||||| | | ||||| | Sbjct 2356449 CAGCACGCTTTCCACCACATCGACCAGCACCTTGACTCGACTCCCCTCGAGTACATGCTC 2356390 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 2356389 TGGCGTTA 2356382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389