Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=2185627 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| ||| || || || || ||| Sbjct 20659 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCA 20600 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 20599 GCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 20540 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||||| || | || | ||| |||||||| || || Sbjct 20539 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 20480 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 20479 TTGACGAAGATCTGCAT 20463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || ||||||||||| || Sbjct 20464 ATACCACCACGCAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCC 20405 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || || || || || |||| |||||||| ||||| || Sbjct 20404 GACAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGT 20345 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | || | ||||||| | || ||| Sbjct 20344 GGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCG 20285 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 20284 ACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 20235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134251508748