Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 520 2e-142 seq6 327 2e-84 seq3 167 4e-36 >seq5 Length=2501492 Score = 520 bits (576), Expect = 2e-142 Identities = 1275/1912 (67%), Gaps = 73/1912 (4%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||| ||| ||||||||||| | |||| ||| || |||||| | || ||| Sbjct 907888 AGGTAGTACTGGCCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGC 907947 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 | | | | || |||| ||| |||| || |||||| ||||| |||| Sbjct 907948 TGCGAGAAC--GAA----GGGT-----TCG-ACAGGTGGATGTTGAGCGACTGCGACTGG 907995 Query 243896 TCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 |||| ||| | |||| || || || || | | |||| ||||||| || | ||| | Sbjct 907996 TCGATGAACG-CGCCACGGTCGGCCGCAAGGTCAATGACAGCCTTCTGCGACACCTCCCA 908054 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGC 244013 | |||||||| || | |||||| | || || || | || ||| ||| | ||||| Sbjct 908055 AACAGTCTTGTAAATTGCCTTGAGCTCATCTGG-AATGTTGGGAATGTGCTGGATCGAGC 908113 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCG 244073 | | | | |||| || | ||||| |||| ||| | ||||| | || | Sbjct 908114 CACCGGAGGCAATGATGAGGTTCTTCATGTCCTCGTCCCAGATGCCCAGGTTGATGAG-G 908172 Query 244074 CCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 | || ||| ||| | || ||||| || || ||||| ||||| ||||| || Sbjct 908173 TCACGG--AGGAGCCAGGGGCAGACGACCTGGAAGTCACCCGAGAGCACACGGCGAGCGT 908230 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 |||| | | || ||||||| || ||| | ||| || ||||||| || | Sbjct 908231 AGAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGG 908290 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 |||| |||||||||| || || || ||| | || |||||| |||| | | Sbjct 908291 CAGTGGGCATGGGCGCGACAAGGAGCGAGTTGCGGACACCGTGCTGAGCGATGTTGGCGC 908350 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||||| |||||||||| | | | | | | | | || |||||| | ||| Sbjct 908351 GGAGCTCGGTCCAGTCCCAGAGGTCGGTGGG---CACACG------GCCCCAGAGGTCGG 908401 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 || ||| |||| || || |||||||||||| ||||| || || Sbjct 908402 GTTGGAGCTTACCCTGCGAGATAGGCGAGCCCTCGTAGGTGGGGTACTTGCCAAACTCCT 908461 Query 244371 GGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGT 244430 |||||| || || | |||||||| |||| |||||||||||| |||||| | || Sbjct 908462 GGGCCATCTCGCACGACGACTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTGAGGT 908521 Query 244431 TCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 | | || ||||| | || || |||||| |||| | ||||||| |||||| Sbjct 908522 TAAGCTCACGGGCGGCAGGCG-AGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCA 908580 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGG 244548 || || |||||||||| |||| ||| | ||| ||| ||||| | || | || | | Sbjct 908581 AGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCG 908640 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608 |||||||| |||| | ||| |||| || |||||| ||| | | | || Sbjct 908641 -ACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTGGTGAT 908699 Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668 ||| |||| || |||||||||| | | ||| | ||| || |||| Sbjct 908700 CTCGTGCAGCTTCTTAAAGTCGTACGACTGG-----CTCT-CAATGTCGA------CAAA 908747 Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTG 244728 | | |||||| | |||||||||||||||||| ||||| || | | | ||||| Sbjct 908748 CGCAGGGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTC 908807 Query 244729 GACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTT 244788 || ||||| ||||||||||| ||||||||||||| |||||||| || |||||||| Sbjct 908808 GATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTT 908867 Query 244789 GGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAG 244848 | |||| ||||||||||||||||||||||| || || |||||| |||||| |||| Sbjct 908868 GCTGTTGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAG 908927 Query 244849 GACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 || | |||||| | | ||||||| ||| ||||| ||||||| | |||||||| Sbjct 908928 GATGGCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCGGCAGCCTCGTA 908987 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCA---GACCTCGTCTAGGCCGGGGCACGA 244965 || ||| || ||| ||||| || | ||| ||| | || ||||||||| Sbjct 908988 GCTCTCGTAGAGCTTCTCAAACTC---CTCCGAGTGGACGTCGGCGAGACCGGGGCACTC 909044 Query 244966 CGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 || ||||||||||| |||| |||||| || ||| ||| | || |||||| |||||||| Sbjct 909045 GGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGG 909104 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 ||||||||| || | ||||||||| | | | ||| ||| ||| |||||| | Sbjct 909105 GATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 909164 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 || || | ||||| || |||||| ||||||| ||||| | ||||| |||| || || Sbjct 909165 GAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACC 909224 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCA 245201 || |||||||||||||||||||| | | | || || |||| | || ||| | Sbjct 909225 AGGGCGCTTGTTGCCTCCCTGGTCGA----CGTAACGGGCAGTGGCGTCGTAGGCGCGGA 909280 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC 245261 | | || || || ||||| |||| ||||||||| || ||||| | ||||||| | | Sbjct 909281 GCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCTTGGCGC 909340 Query 245262 TGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCT 245321 | |||| |||| | || | || || || ||||||||| | |||||| ||| Sbjct 909341 GAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCT 909400 Query 245322 TGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGG 245381 ||| |||||| ||||| || || ||| ||||||| || |||||||| || | Sbjct 909401 TGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACG 909460 Query 245382 ACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 ||| |||||| | |||| | | | |||||| || || || |||||||| ||||| | Sbjct 909461 ACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAAC 909520 Query 245442 GGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCA 245501 | ||| | || |||||| | ||||| || ||||||||||||||||| | Sbjct 909521 GCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAA 909580 Query 245502 GGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTG---- 245557 ||| | ||||| |||||||||| |||| | | || | || ||| Sbjct 909581 TAGCGACACGCATGATCATGTGCTGGGGACGCTCG--GCGACCTT----GCCGTTGATGC 909634 Query 245558 --AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGT 245615 || | ||| ||||||||||| |||||||| |||||||| ||| ||||||| || Sbjct 909635 GCAGGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCGCGGT 909694 Query 245616 GGTGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTCTGACTGACCTCGTA 245667 || ||| ||| | |||||| ||| ||||||||| ||||||||| Sbjct 909695 CGTAGATGATGGCCGAGTCGAGCACCTCCTTGTGCTTCTGGACGACCTCGTA 909746 >seq6 Length=2185627 Score = 327 bits (362), Expect = 2e-84 Identities = 503/706 (71%), Gaps = 11/706 (2%) Strand=Plus/Plus Query 42441 TCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT 42500 ||||||||||| ||||| |||||||| | | | ||| ||||||||| Sbjct 94397 TCTGACGGCATCGTCAACGAGAACCTTGTCGAGCGTTTCTGCGGTGAGGTGCAGATTCCC 94456 Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| ||||||||||||||||| || |||||| | ||||| ||| |||| Sbjct 94457 GAGGCCAAGACATTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTAC 94516 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC-GTAACGGGCTGTTCAAGGC 42619 | || || |||||||||| | || | || || | || |||||||| || Sbjct 94517 TCGCTCCTCATCGACACGTACATTCGCGACAATG-CGCGCCGCCACTACCTGTTCAACGC 94575 Query 42620 CATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAG 42679 || |||| || |||||||||||||||||||| |||||||||||||||||||| | Sbjct 94576 GATTGAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCT-G 94634 Query 42680 TCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738 | || | | |||| | |||| | || | |||||| ||||||||||||||||||||| Sbjct 94635 ACAAGAACTCGTCGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCT 94694 Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTC 42797 |||||||| | || ||||||||||||||||||||| || ||| || |||||||| ||| Sbjct 94695 TCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGTCTC 94753 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 |||||||| ||||| |||||| | |||||||| || || | |||||||||||||| Sbjct 94754 ACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTG 94813 Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCAC 42916 || ||| | ||||||| | | | |||||| || || |||||| Sbjct 94814 CTCTTC---ACCCACCTCCGCCGC-CGCCCTCACCCAGACACCATCAACATGATCATCCG 94869 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGG 42976 |||||||| | ||||||| | ||||||||||| | | || ||||| || || |||| Sbjct 94870 CGAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGG 94929 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCA 43036 ||||||| || ||||||||| ||||||| ||| |||||||||| || || | Sbjct 94930 CATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGC 94989 Query 43037 GATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 | | || | | | |||||| | | ||| |||||||||||||||| ||||| Sbjct 94990 GCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTC 95049 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 | | |||||||| | ||||| |||||| ||||||| | | |||| Sbjct 95050 GCTCCAGGGCAAGGCAAACTTCTTCGAGTCGCGCGTCTCGGCCTAC 95095 >seq3 Length=3502833 Score = 167 bits (184), Expect = 4e-36 Identities = 246/342 (72%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||| ||||| |||||||||||||| | ||| | ||||| ||||| || | Sbjct 1064836 GAAAAAGGCCGACTGGGCGCTCAAATACATC---ACCCCCGAGATGCCGTTCCGCACACG 1064892 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | || |||| || | |||||||| |||||||| || ||| | ||||| ||||||| Sbjct 1064893 GTTGATAGCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTT 1064952 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||| | ||| || || || |||| || ||||||||||| ||||| |||||| Sbjct 1064953 CTGGTTGAAGAAGCGCGGACTC-ATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGC 1065011 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| |||| ||||||||||| ||||||| | ||||||||| |||| Sbjct 1065012 GCGACGAGGGCACACATACCGACTTTGCCTGTCTCCTGTAC---GGCCACCTCAAGCACC 1065068 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | | | |||| ||||| | || |||| ||||| || ||||| |||||||||| Sbjct 1065069 AATGCACCGAGGACGAGGTCCACACGATTATCAGCGAGGCAGTTGAGATTGAGAAGGAGT 1065128 Query 42943 TCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAAC 42983 ||||||| || ||||| |||||| ||||| |||| || ||| Sbjct 1065129 TCCTCACAGAGGCGCTG-CCGTGTGCCCTGATCGGTATCAAC 1065169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338857677040