Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 127 5e-24 seq2 89.7 1e-12 >seq6 Length=2185627 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || |||||||| | || ||||| |||| || || || ||||| || |||||| Sbjct 20692 TGACCCCCGCGGAGACGGAGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCG 20633 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || || || || | || || || || |||||||| ||||| || | Sbjct 20632 GACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGA 20573 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || |||| || || || || || | ||| ||| || Sbjct 20572 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCG 20513 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 20512 ACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || ||||| |||| ||| || || ||||| || ||||| | Sbjct 20234 TCCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 20175 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||||||||| || | || || || |||||||| || ||||| || ||| Sbjct 20174 GAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGG 20115 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| || | || ||||| || || | || || || || Sbjct 20114 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 20055 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||| ||||| |||||||| Sbjct 20054 CTCGAGGGTGATGGTCTTTCCGGTCAG 20028 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||| ||| ||||||||||| || | || || || |||||||| || ||||| || Sbjct 19843 TAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 19784 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||||| || || || |||||||| || | || ||||| || || | || | Sbjct 19783 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAC 19724 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || ||||| ||||| ||||| ||||| || Sbjct 19723 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 19689 >seq2 Length=3675159 Score = 89.7 bits (98), Expect = 1e-12 Identities = 277/424 (65%), Gaps = 6/424 (1%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 |||||| |||||||| | | || ||||||||| || | ||| | | ||||||||| Sbjct 3085201 ATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGTT 3085260 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 ||||| || || || | || || || || |||||| || || ||||| || Sbjct 3085261 GTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTTCACC 3085320 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 325521 ||||| ||||| | | ||| | || ||||| | || ||| || ||||| | || Sbjct 3085321 GTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCTG 3085380 Query 325522 CGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATC 325581 | | | ||||||||||| | | | ||||| || || ||| || |||| || || Sbjct 3085381 CTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGTC 3085440 Query 325582 AACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTC 325641 ||||||| |||||| || ||| | ||||||| ||||| ||||||| Sbjct 3085441 CGCGACCGAGGGAATGGAACGGATGTTGTCGGCCATGGAGAACAGGATAAGCTCCTTGTT 3085500 Query 325642 GATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTA 325701 || ||||| | | ||| | || | | |||||| || | || || | | | Sbjct 3085501 GACAAAGTCCTGGATGGGGATCTTCTCAATATCGTGGTCGAGGAAGGTACCGGGCTTGAA 3085560 Query 325702 -TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAGAACGGTCAAT 325758 || || | |||||||||||| || ||||| || | ||||||||| | |||||| Sbjct 3085561 CTGGCG-AAGCCACTCCTTGCGGTCGTCGGCCTTCTT--CTTGTTGAACGCCATGTCAAT 3085617 Query 325759 GAGC 325762 |||| Sbjct 3085618 GAGC 3085621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653961684662