Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 102 2e-16 seq2 96.9 8e-15 >seq6 Length=2185627 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | | |||||| | |||||||| || || || ||||||||| | Sbjct 94921 GCTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCT 94980 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | || || | |||||||| ||||| || | ||||||||| Sbjct 94981 GCTCGTCGCGCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGA 95040 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | | || ||||| || || || | ||||||||||| Sbjct 95041 GATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGA 95076 >seq2 Length=3675159 Score = 96.9 bits (106), Expect = 8e-15 Identities = 296/453 (65%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || |||||||| || || | || || |||||| |||||||| | | || ||||||| Sbjct 3085172 TTGGTGAAAATGTAACGAGGGCTGGCAGCATCCTTGCCACCCTGGATACGCGTACCGAAC 3085231 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || | ||| | | ||||||||| ||||| || || || | || || || Sbjct 3085232 TGACCGTTGGGCGAGAGGAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCG 3085291 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 || |||||| || || ||||| || ||||| ||||| | | ||| | || ||| Sbjct 3085292 ACAATGGTCATGACGAGGGACGCTTCACCGTGGTGGTAGGCAGTGTTCTCAGAGACATAA 3085351 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATC 297673 || | || ||| || ||||| | || | | | ||||||||||| | | | ||| Sbjct 3085352 CCACCGAGCTGGGCGACCTTGATCTCCTGCTTGAGGTTGCGCTTGAAGCACGCAAACATC 3085411 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCG 297733 || || || ||| || |||| || || ||||||| |||||| || ||| Sbjct 3085412 ACCTTGCGCTGACCGGGCTTGAGGCCGTCCGCGACCGAGGGAATGGAACGGATGTTGTCG 3085471 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTC 297793 | ||||||| ||||| ||||||| || ||||| | | ||| | || | Sbjct 3085472 GCCATGGAGAACAGGATAAGCTCCTTGTTGACAAAGTCCTGGATGGGGATCTTCTCAATA 3085531 Query 297794 TTGTGGTCAAGTTGATTTCCTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC 297852 | |||||| || | || || | | | || || | |||||||||||| || ||||| Sbjct 3085532 TCGTGGTCGAGGAAGGTACCGGGCTTGAACTGGCG-AAGCCACTCCTTGCGGTCGTCGGC 3085590 Query 297853 --TCGTGACTTGTTGAAAGAACGGTCAATGAGC 297883 || | ||||||||| | |||||||||| Sbjct 3085591 CTTCTT--CTTGTTGAACGCCATGTCAATGAGC 3085621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879590211150