Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 223 4e-53 seq6 168 8e-37 seq2 150 2e-31 seq3 107 2e-18 >seq5 Length=2501492 Score = 223 bits (246), Expect = 4e-53 Identities = 682/1048 (65%), Gaps = 31/1048 (3%) Strand=Plus/Plus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || |||||||| || ||||| || | ||||| || | ||| || || ||||| Sbjct 908575 TCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 908634 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 ||| ||||| || | ||| | ||| ||| | || || ||||| |||||||| Sbjct 908635 TCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTG 908694 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAG 114464 ||||| || || ||||| | | || | |||| |||| | |||| || || Sbjct 908695 GTGATCTCGTGCAGCTTCTTAAAGTCGTACGACTGGC--TCTCAATGTCGACAAACGCAG 908752 Query 114465 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 114524 | ||||| || || ||||| || || || | | ||| || | | |||||| || | Sbjct 908753 GGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGA 908812 Query 114525 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 114584 | || || || | || || ||| |||||||| | || || || || ||||| ||| Sbjct 908813 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCTGT 908872 Query 114585 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 114644 | || |||||||| |||||| | || || ||||| || |||| || ||| || | Sbjct 908873 TGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGATGG 908932 Query 114645 CCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT------CCTCCTCG 114697 | ||||| | || | | || | ||| ||| || |||| | ||||| Sbjct 908933 CAAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCGGCAGCCTCG 908985 Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757 || | |||||| |||||||| || | | || | ||| || || || Sbjct 908986 TAGCTCTCGTAGAGCTTCTCAAACTCCTCCGAGTGGACGTCGGCGAGACCGGGGCACTCG 909045 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||||| | ||| | ||| | || | |||| |||||||||||||| ||||| ||| Sbjct 909046 GCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGGG 909105 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 ||||||||||| ||||||| || ||| |||| | || || | || || || || Sbjct 909106 ATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 909165 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | || | ||||| | | || |||||||| || || ||||| | |||| | || Sbjct 909166 AGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACC- 909224 Query 114938 TTACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 | | || || |||||| || || | || ||||| | | |||| ||| Sbjct 909225 --AGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGAGC 909282 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 115049 || || | |||||| | || | ||| || || || ||| ||||| | | |||| | Sbjct 909283 ATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGC 909340 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 | | |||||||| | ||| ||||| || || ||| ||||| || ||||| | Sbjct 909341 GAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCT 909400 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 |||| || ||||||| ||||| |||||||| |||| | |||| || ||||| || Sbjct 909401 TGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACG 909460 Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229 |||| || || || ||||| ||||||||||||||||| | ||||||| |||| || Sbjct 909461 ACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAAC 909520 Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289 | ||||| | ||| || || | || ||||| || ||||| ||||| | Sbjct 909521 GCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAA 909580 Query 115290 TCGAGACCCGCATAAACATGTATTGGGG 115317 | | ||| ||||| | ||||| ||||| Sbjct 909581 TAGCGACACGCATGATCATGTGCTGGGG 909608 >seq6 Length=2185627 Score = 168 bits (186), Expect = 8e-37 Identities = 361/533 (68%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| |||| || || ||| |||||||||||||| ||| || | | ||| | Sbjct 95101 CTTGGAGTAGGCCGAGACGCGCGACTCGAAGAAGTTTGCCTTGCCCTGGAGCGAGATCAT 95042 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGA 125870 ||||||||| || |||||||| ||||| |||| ||| | || | | || Sbjct 95041 CTCCATAAAGTCGAATGGGTTTGCAGAGTTGTAAATC-TTGTCGTTGCCGAGCGCGACGA 94983 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 | || || || | ||| |||||||||||| |||| | | | |||||| ||||||| Sbjct 94982 GCAGGCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGATGA 94923 Query 125931 G-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | | || ||||| ||||| || |||| | | ||| || | ||||| || || | | Sbjct 94922 GCGAGACG-GGGAGGGCGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGATG 94864 Query 125990 ATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 || || |||||||| ||| | ||| | ||||||| |||| Sbjct 94863 ATCATGTTGATGGTGTCTGGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAGCAGGCAGGCA 94804 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||||||||||||||| || |||||||| || || |||||| || || ||| Sbjct 94803 AAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGC 94744 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | ||| || |||||||||||||| ||| Sbjct 94743 ATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCC 94684 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAAC 126226 || || || || || | |||||||| ||||| || ||| || |||| || | Sbjct 94683 TCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGA---CGAGTTCTTGTCAGAAATC 94627 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || || | |||||| | ||||| |||| ||| || || | | ||| ||||| Sbjct 94626 CAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGC 94574 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016 ||| |||| ||||||||| || |||||||| | ||| || || || | || || Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076 |||| | || || || | | ||||||||||| |||||||| |||||||| | || Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 11077 GGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | | ||| | || ||||||||| || | || || ||| |||| |||||||| | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAG--GGCACCACGTGGGATCCTGGCACC 11190 |||| || || || || || ||| ||| ||| || || || ||| ||||||| Sbjct 1167850 TCTTACCGGTACCGGGCGGGCC--CGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq2 Length=3675159 Score = 150 bits (166), Expect = 2e-31 Identities = 291/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || || || ||||| || | ||||||||||||||||| |||| || || | ||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 171788 TCTGGTTCAATCGCAC-GCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGG 171846 || || || || || | | |||||||| ||| | |||||| | || ||| || Sbjct 3085082 TCGGGCTCGAT-GCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAAGG 3085140 Query 171847 ATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 171905 | ||||| | ||| |||| |||| || || ||||| ||||| | | | | Sbjct 3085141 GTGGAAGATGGTGTGAGTCATC-TTGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAG 3085199 Query 171906 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATAT 171965 |||| ||||||||| || |||||| || || ||||| || ||||| ||||| | Sbjct 3085200 CATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGT 3085259 Query 171966 TGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCAC 172025 |||| |||| ||||| | || | |||||| || ||||||| |||||| Sbjct 3085260 TGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTTCAC 3085319 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 |||| |||||||| | || || | |||||| | | | ||| || ||||| ||||| | Sbjct 3085320 CGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCT 3085379 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 ||||||||| | |||||||||| |||| ||||| | ||| ||||||||||||| Sbjct 3085380 GCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGT 3085439 Query 172146 CGGC 172149 | || Sbjct 3085440 CCGC 3085443 >seq3 Length=3502833 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || |||||||| || || |||||| || || ||||||| || |||||| Sbjct 1065021 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTC 1064962 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||||||||| || ||| || || || || |||||||| ||||| ||||| |||||| Sbjct 1064961 TTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAGAAGATCCCCTCGACACAAGCGAAC 1064902 Query 126185 GC 126186 || Sbjct 1064901 GC 1064900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353383459320