Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5 298 5e-76 >seq5 Length=2501492 Score = 298 bits (330), Expect = 5e-76 Identities = 623/924 (67%), Gaps = 8/924 (1%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| || || ||| ||||||||||| || | |||| | Sbjct 909680 TACAACTACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCCTGCGCATCAACGGCAAG 909621 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || || || | ||||| ||||| || || || |||||| || || Sbjct 909620 GTCGCCGAGCGTCCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAAC 909561 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATGGCC 93894 || ||| || | | | || |||| ||| | | || ||| || Sbjct 909560 ATTGAGAAGGTGCTCGACACGTACAACCTCATGTCGGA---GCGTTACTTCACCCACGCG 909504 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||||| |||||||| || ||||| || |||||||| ||||| || || | Sbjct 909503 TCGCCAACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTC 909444 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| |||||| || ||| || | ||||| ||||||| ||| || ||| Sbjct 909443 GCCATGAAGGACGACTCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCTCAGATC 909384 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || ||||| || ||||| || | || |||| ||| || ||| Sbjct 909383 TCCAAGACTGCTGGTGGTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTAC 909324 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||||||| ||| ||| ||||| ||||||| |||||||| | || | || | Sbjct 909323 ATTGCCGGTACCAACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCC 909264 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || ||||| |||||||| || | | | ||| | ||||| |||| ||| Sbjct 909263 ACTGCCCGTTACGTCGACCAGGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTC 909204 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||||| |||||| | ||| ||||||| || |||||||||||||| || Sbjct 909203 GAGCCTTGGCACGCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAG 909144 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | || | ||||||||||||||||||||| | || |||||||| ||||| || Sbjct 909143 GAGGTTCGCGCTCGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGT 909084 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||| || || ||||| || | || || || || ||||| || ||||| Sbjct 909083 GTCGAGGCCGACGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGAC 909024 Query 94375 GT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | | | | ||||| | | || | | ||||| | ||||||| | Sbjct 909023 GTCCACTCGGAGGAG-TTTGAGAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCG 908965 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| || | || |||||| ||| | ||| | || | ||| ||||| || Sbjct 908964 CAAGACCATCAAGGCCCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGG 908905 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | |||| ||| | | ||||||| ||| |||| |||||||||||||||||||||||| Sbjct 908904 TGGTCCCTTCATGCTCTACAAGGACGCTGCCAACAGCAAGTCCAACCAGCAGCACCTCGG 908845 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||| || || || ||||| ||||| ||||||| | | || |||||| | Sbjct 908844 CACCATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGT 908785 Query 94614 TGCTGTGTGTAACCTGGGCTCCAT 94637 || || || ||||||| ||| || Sbjct 908784 CGCCGTCTGCAACCTGGCCTCGAT 908761 Score = 107 bits (118), Expect = 2e-18 Identities = 229/342 (67%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| |||| ||||| || ||||||||||| ||||| || |||||||| Sbjct 908333 CACGGTGTCCGCAACTCGCTCCTTGTCGCGCCCATGCCCACTGCCTCGACCTCGCAGATC 908274 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 |||||| ||||||| ||||| |||| |||||| | | ||| | || |||||| Sbjct 908273 CTTGGCTGGAACGAGTGCTTCGAGCCCTACACCTCGATGCTCTACGCTCGCCGTGTGCTC 908214 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 | || || |||| ||| || | ||||| || ||||| | ||||| | Sbjct 908213 TCGGGTGACTTCCAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATCAACCTGGGCATC 908154 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 |||| || | | ||||||| | | | || ||||| ||||| |||| || Sbjct 908153 TGGGACGAGGACATGAAGAACCTCATCATTGCCTCCGGTGGCTCGATCCAGCACATTCCC 908094 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 | || || || || ||||||| | |||||||| || |||||| | ||||| | Sbjct 908093 AACATTCCAGATGAGCTCAAGGCAATTTACAAGACTGTTTGGGAGGTGTCGCAGAAGGCT 908034 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | | |||| ||||||| ||| || | |||||| |||| Sbjct 908033 GTCATTGACCTTGCGGCCGACCGTGGCGCGTTCATCGACCAG 907992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723020662840