Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 >seq6 Length=2185627 Score = 134 bits (148), Expect = 1e-26 Identities = 299/443 (67%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | | ||||| ||| ||||||||| | || || || ||| |||||| Sbjct 94652 GCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 94711 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | || | |||||||| || || ||| ||||||| | Sbjct 94712 TCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTC 94771 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570 || ||||||||||| || || ||||| |||||||| ||||| || || || || Sbjct 94772 ATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCACCCACCTCCGC 94831 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTAT 52627 ||| | | ||||| ||| | |||| ||| ||||| || || || Sbjct 94832 CGCCGCCCTC----ACCCAGACACCATC---AACATGATCATCCGCGAGGCCGTTGCGAT 94884 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 ||| | ||||| | || | ||| || || ||| ||| | ||||||||||| | Sbjct 94885 CGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCGCGCT 94944 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-A 52746 ||||||| ||||||| |||||||| || || || ||| | || |||| |||| | | | Sbjct 94945 CATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGCGCTC-GGCAACGACA 95003 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 || | |||| || || || || || |||||| | | || ||||| |||||||| Sbjct 95004 AGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGG 95063 Query 52807 CCAACTTTTTCGAGAAGCGAGTC 52829 | ||||| |||||| ||| ||| Sbjct 95064 CAAACTTCTTCGAGTCGCGCGTC 95086 Score = 127 bits (140), Expect = 2e-24 Identities = 148/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| ||||||||| || || |||| | Sbjct 20428 GACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCA 20369 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538 |||| |||||||| ||||| || || ||||| || ||||| ||| | || | || Sbjct 20368 AAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTCAC 20310 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| | ||||| ||||||| || | ||| || || || || || | Sbjct 20309 ATTG-TCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCT 20251 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 20250 TCACAAAGATCTGCAT 20235 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||||| |||||||| || || || | | Sbjct 20656 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCA 20597 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | || Sbjct 20596 AAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 20538 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| |||||| ||||||| || | ||| || || || || || | Sbjct 20537 ATTG-TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCT 20479 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 20478 TGACGAAGATCTGCAT 20463 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 || || ||||||||| | ||| |||||||| || |||| ||| |||| || ||||| | Sbjct 1016829 GGTCTTGACGTTGCCGAGGTCACCGACGTGGCGGTCGGCGGCGGTGGGGGCACCGTGGTT 1016888 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419 |||| ||||| ||||| |||| ||||| ||||||||||| | |||| || || Sbjct 1016889 CTTGCCAAATGGGTTGAAGTGGCCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCTCCAAA 1016948 Query 57420 CTCGTGAACGT 57430 ||||||||||| Sbjct 1016949 CTCGTGAACGT 1016959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262220104880