Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 163 3e-35 seq2 87.8 2e-12 seq8 84.2 2e-11 >seq6 Length=2185627 Score = 163 bits (180), Expect = 3e-35 Identities = 352/517 (68%), Gaps = 17/517 (3%) Strand=Plus/Plus Query 47061 GAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAAAC 47117 |||| ||| |||||| | | |||||||| ||||| | || | ||| || || Sbjct 94580 GAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGACAA- 94638 Query 47118 GAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTC 47177 ||| |||| | ||||| ||| | ||||| || ||| |||||||||| |||||||| Sbjct 94639 GAACTCGTCGTTT--GCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTC 94696 Query 47178 TCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACG 47237 |||||| ||||| | || || | | || | || | |||||||| ||||| Sbjct 94697 TCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACC 94756 Query 47238 TTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTAC 47297 || ||||||||| |||||| | ||||| || || |||||| |||||||||| || | Sbjct 94757 TTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTC 94816 Query 47298 TACAAC-ACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTT--TGC- 47353 | || | || | || | | || |||| ||| ||||| | | | Sbjct 94817 TTCACCCACCTCCGCCG--CCGCCCTC--ACCCAGACACCATCA---ACATGATCATCCG 94869 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| ||||| || || ||| ||||| || | || || || |||| || | | || Sbjct 94870 CGAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGG 94929 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||||| | | | ||| | ||||||| || ||||||||||||||||||||||| Sbjct 94930 CATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGC 94989 Query 47474 GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTC 47533 ||| | |||||||||| || | | || |||||||| |||||| | | || || Sbjct 94990 GCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTC 95049 Query 47534 GCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 |||| |||||||| | ||||| |||||| ||||||| Sbjct 95050 GCTCCAGGGCAAGGCAAACTTCTTCGAGTCGCGCGTC 95086 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||| ||| ||| || ||||| || ||| Sbjct 20659 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCA 20600 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||||||||||||| || ||| |||| Sbjct 20599 GCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 20540 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| |||| || | ||| |||||||| || || Sbjct 20539 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 20480 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 20479 TTGACGAAGATCTGCAT 20463 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| || | || | || ||||| || || || ||||| || Sbjct 20234 TCCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 20175 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 20174 GAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGG 20115 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| || ||||| |||| |||| |||||||| | ||||| Sbjct 20114 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCCGAAGACTCGA 20056 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| ||| | || || |||||||| Sbjct 20055 CCTCGAGGGTGATGGTCTTTCCGGTCAG 20028 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 50662 GTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCCAA 50721 |||||| || || ||||||||||||||| ||||| |||| || |||||||| ||| || Sbjct 1016838 GTTGCCGAGGTCACCGACGTGGCGGTCGGCGGCGGTGGGGGCACCGTGGTTCTTGCCAAA 1016897 Query 50722 CGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTGCAC 50781 || || ||||| |||||||||| ||||||||||| |||| || || ||||| || Sbjct 1016898 TGGGTTGAAGTGGCCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCTCCAAACTCGTGAAC 1016957 Query 50782 GT 50783 || Sbjct 1016958 GT 1016959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || || || || || || ||||| || || Sbjct 20431 GTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 20372 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || || |||||||||||| || || ||| Sbjct 20371 GCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 20312 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| || |||||| |||| || | ||| || ||||| || || Sbjct 20311 ACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTC 20252 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 20251 TTCACAAAGATCTGCAT 20235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || |||||||||||| Sbjct 19822 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 19763 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||| | |||||| |||| ||| | Sbjct 19762 TCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCTGACGACTCGACCTCGAGGGTGAT 19704 Query 127078 CGTTTTGCCGGTCAG 127092 || |||||||| || Sbjct 19703 GGTCTTGCCGGTGAG 19689 >seq2 Length=3675159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 2842997 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2843056 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 2843057 GCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 2843116 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| |||||||| |||||| || | ||| | || ||||| || || Sbjct 2843117 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAG 2843172 >seq8 Length=1129179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || ||||| |||||||||||| Sbjct 496504 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTG 496445 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||||| ||| || |||| ||| | Sbjct 496444 TCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCCGAGGACTCCACCTCGAGGGTGAT 496386 Query 127078 CGTTTTGCCGGTCAG 127092 || ||||| || || Sbjct 496385 GGTCTTGCCCGTAAG 496371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500627630960