Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 215 6e-51 seq6 176 6e-39 seq2 150 2e-31 seq3 122 1e-22 >seq5 Length=2501492 Score = 215 bits (238), Expect = 6e-51 Identities = 681/1047 (65%), Gaps = 29/1047 (3%) Strand=Plus/Plus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || |||||||| || ||||| || | ||||| || | ||| || || ||||| Sbjct 908575 TCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 908634 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 ||| ||||| || | ||| | ||| ||| | || || ||||| |||||||| Sbjct 908635 TCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTG 908694 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAG 116425 ||||| || || ||||| | | || | |||| |||| | |||| || || Sbjct 908695 GTGATCTCGTGCAGCTTCTTAAAGTCGTACGACTGGC--TCTCAATGTCGACAAACGCAG 908752 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 | ||||| || || ||||| || || || | | ||| || | | |||||| || | Sbjct 908753 GGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGA 908812 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 | || || || | || || ||| |||||||| | || || || || ||||| ||| Sbjct 908813 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCTGT 908872 Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605 | || |||||||||||||| | || || ||||| || |||| || ||| || | Sbjct 908873 TGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGATGG 908932 Query 116606 CCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT------CCTCCTCG 116658 | ||| | | || | | || | ||| ||| || |||| | ||||| Sbjct 908933 CAAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCGGCAGCCTCG 908985 Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCT 116716 || | |||||| ||||||||| || | | | | || | ||| || || || Sbjct 908986 TAGCTCTCGTAGAGCTTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGACCGGGGCACT 909043 Query 116717 TATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 116776 | || || | ||| | ||| | || | |||| || ||||||||||| ||||| | Sbjct 909044 CGGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGG 909103 Query 116777 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 116836 |||||||||| || ||||||| || ||| |||| | || || | || || || | Sbjct 909104 GGATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGC 909163 Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 116896 | | || | ||||| | | || |||||||| || || ||||| | |||| | | Sbjct 909164 GGAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCAC 909223 Query 116897 CCTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 | ||| || |||||| || || | || || |||| | |||| |||| Sbjct 909224 CAGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGAGCA 909283 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCT 117011 | || | |||||| | || | ||| || || || ||| ||||| | | |||| | Sbjct 909284 TGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGCG 909341 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 | | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | | Sbjct 909342 AATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCTT 909401 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 ||| || ||||||| || || |||||||| |||| | |||| ||| ||||| ||| Sbjct 909402 GAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACGA 909461 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 ||| || || || ||||| ||||||||||||||||| | ||||||| |||| || Sbjct 909462 CATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAACG 909521 Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251 | ||||| | ||| || || | || ||||| || ||||| ||||| || Sbjct 909522 CTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAAT 909581 Query 117252 TGAGACCCGCATAAACATGTATTGGGG 117278 | ||| ||||| | ||||| ||||| Sbjct 909582 AGCGACACGCATGATCATGTGCTGGGG 909608 >seq6 Length=2185627 Score = 176 bits (194), Expect = 6e-39 Identities = 366/534 (69%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| || ||| ||| |||||||||||||| ||| || | ||| ||| | Sbjct 95101 CTTGGAGTAGGCCGAGACGCGCGACTCGAAGAAGTTTGCCTTGCCCTGGAGCGAGATCAT 95042 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGA 127343 ||||||||| || |||||||| ||||| |||| ||| | || | | || Sbjct 95041 CTCCATAAAGTCGAATGGGTTTGCAGAGTTGTAAATC-TTGTCGTTGCCGAGCGCGACGA 94983 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 | || || || | ||| |||||||||||| |||| | | | |||||| ||||||| Sbjct 94982 GCAGGCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGATGA 94923 Query 127404 G-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | || ||||| ||||| || |||| | | ||| || | || || || || | | Sbjct 94922 GCGAGACG-GGGAGGGCGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGATG 94864 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CAG 127520 || || || ||||| ||| | ||| | ||||||| || ||| Sbjct 94863 ATCATGTTGATGGTGTCTGGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAG---CAGGCAG 94807 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 94806 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCG 94747 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| ||||| ||||||||||| Sbjct 94746 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATG 94687 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 ||||| || || || || | |||||||||||||| || || | |||| | || Sbjct 94686 CCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGA-CGAGTTCTTGTCAGAAAT 94628 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || | |||||| | ||||| |||| ||| || || | | ||| ||||| Sbjct 94627 CCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGC 94574 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 ||| |||| ||||||||| ||||| ||||| | ||| || || || | || || Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 |||| | || ||||| | | ||||||||||| ||||||||||||||||| | || Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 12992 GGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 | | ||| | || ||||||||| || | || || ||| |||| |||||||| | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||| || || || || |||| | | ||| || || || ||| ||||||| Sbjct 1167850 TCTTACCGGTACCGGGCGGGCCCGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq2 Length=3675159 Score = 150 bits (166), Expect = 2e-31 Identities = 291/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || || || ||||| || | ||||||||||||||||| |||| || || | ||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 175808 TCTGGTTCAATCGCAC-GCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGG 175866 || || || || || | | ||||||||| ||| | |||||| | || || || Sbjct 3085082 TCGGGCTCGAT-GCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAAGG 3085140 Query 175867 ATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 175925 | ||||| | ||| |||| |||| || || ||||| ||||| | | | | Sbjct 3085141 GTGGAAGATGGTGTGAGTCATC-TTGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAG 3085199 Query 175926 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATAT 175985 |||| ||||||||| || |||||| || || ||||| ||| ||||| ||||| | Sbjct 3085200 CATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGT 3085259 Query 175986 TGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCAC 176045 |||| ||||| |||| | || | |||||| || ||||||| |||||| Sbjct 3085260 TGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTTCAC 3085319 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||| | || || | ||||| | | | ||| || ||||| ||||| | Sbjct 3085320 CGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCT 3085379 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 ||||||||| | |||||||||| |||| ||||| | ||| ||||||||||||| Sbjct 3085380 GCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGT 3085439 Query 176166 CGGC 176169 | || Sbjct 3085440 CCGC 3085443 >seq3 Length=3502833 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || |||||||| || || |||||| || || ||||||| || |||||| Sbjct 1065021 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTC 1064962 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || ||| || |||||||| |||||||||||||| ||||| |||||| Sbjct 1064961 TTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAGAAGATCCCCTCGACACAAGCGAAC 1064902 Query 127658 GC 127659 || Sbjct 1064901 GC 1064900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506977603640