Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 118 2e-21 seq3 89.7 8e-13 >seq5 Length=2501492 Score = 118 bits (130), Expect = 2e-21 Identities = 350/534 (66%), Gaps = 12/534 (2%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| |||||| || |||| || || ||||| || | || | || Sbjct 909087 CTTCATGAAAAGGTCGGGGATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTC 909146 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || ||| || | | |||||||||||| ||||| | Sbjct 909147 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAACACGTCGGCGTGCCAAGGCTCGA 909205 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| || |||||||| || || | | | Sbjct 909206 GGTAGATGGCGAACGCACCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGG 909265 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||| | | | || ||||| || || | |||||| | | ||||| || | | ||| Sbjct 909266 CGTCGTAGGCGCGGAGCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGT 909325 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| |||| || || || |||| | ||||| || Sbjct 909326 ACGAGCCCTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGA 909385 Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 |||| ||||| ||||| || ||| ||||||||| | || || |||||| || | Sbjct 909386 TCTGAGCGCAGGTCTTG-AGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCG 909444 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || ||| ||||||| | || || || | ||| || |||| |||||| || || Sbjct 909445 ACGAGAAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGAC 909504 Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCTCCAG 205638 |||||| ||||| | ||||| ||| |||| || || ||||| |||| | Sbjct 909505 GCGTGGGTGAAG----TAACGCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAAT 909560 Query 205639 ATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | |||||| ||||| || |||| | ||||| | ||| || || | ||| Sbjct 909561 GTTGTCGCCGTGGATACCAATAGCGACACGCATGATCATGTGCTGGGGACGCTC 909614 >seq3 Length=3502833 Score = 89.7 bits (98), Expect = 8e-13 Identities = 183/266 (69%), Gaps = 11/266 (4%) Strand=Plus/Minus Query 159792 AGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGA 159851 ||||||| || | ||| | || ||||| || | || ||||||||||||||||| | Sbjct 1065170 AGTTGATACCGATCAGGGCACACGGCAGCGCCTCTGTGAGGAACTCCTTCTCAATCTCAA 1065111 Query 159852 CCGCTTCGGTCACAATC-TGCGAGACACGTTCGTACCCCG-GCTT--GCCCAAAATGTGG 159907 | || ||| | | |||| || | ||| |||| | | | || | | | | |||| Sbjct 1065110 CTGCCTCGCTGATAATCGTGTG-GACC---TCGTCCTCGGTGCATTGGTGCTTGAGGTGG 1065055 Query 159908 TCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCG 159967 | | ||||||| || ||||||||| || |||||||| || ||||||| |||| Sbjct 1065054 CCGT---ACAGGAGACAGGCAAAGTCGGTATGTGTGCCCTCGTCGCGCGAGATGAGCTCG 1064998 Query 159968 TTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAA 160027 ||||| | | ||||||| |||||| || ||| || | ||| || ||||| || || Sbjct 1064997 TTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTCTTCAACCAGAAGATGGCAGCGAAC 1064938 Query 160028 GCACCGCTAAAAAAGATCCCCTCCAC 160053 | || ||| ||||||||||| || Sbjct 1064937 GAGCCAGAAAAGAAGATCCCCTCGAC 1064912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154911756240