Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq2 123 6e-23 >seq6 Length=2185627 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| || | ||||||||| | || ||| | || || Sbjct 20446 AGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCC 20387 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| |||||||||||||| || || || || ||| Sbjct 20386 TCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 20327 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| |||||| | | || || || | || |||||| Sbjct 20326 TGAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTC 20267 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || Sbjct 20266 TTTCCGGTGAGGGTCTTCACAAAGATCTG 20238 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| ||||||||| | || || | ||||| Sbjct 20674 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCC 20615 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||||||||| ||| ||| || || ||| Sbjct 20614 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 20555 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | ||||||||| Sbjct 20554 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 20495 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 20494 TTGCCGGTGAGGGTCTTGACGAAGATCTG 20466 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| ||||| |||||||| |||| ||||||||| | | || Sbjct 20227 CGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTG 20168 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||| |||||||||||||| ||||||||||| || || || Sbjct 20167 CGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGGATGCCC 20108 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 20107 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGG 20048 Query 199589 GTGATCGTCTTACCCGTGAG 199608 ||||| ||||| || || || Sbjct 20047 GTGATGGTCTTTCCGGTCAG 20028 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| | | || | ||| || || |||||||| |||||||||||||| ||||||| Sbjct 19845 TGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 19786 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| || || || || ||||| ||||| ||| ||| |||| |||||||| Sbjct 19785 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTG 19726 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 | || || || | ||||| ||||| || ||||| Sbjct 19725 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 19689 >seq2 Length=3675159 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 2842982 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2843041 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| |||||||||||||| || || || || ||| Sbjct 2843042 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2843101 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 2843102 TGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 2843161 Query 199598 TTACCCGTGAG 199608 || |||||||| Sbjct 2843162 TTGCCCGTGAG 2843172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921161956943