Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq2 123 3e-23 seq8 111 2e-19 >seq6 Length=2185627 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || |||||||||||||| || || Sbjct 20654 CTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAA 20595 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 20594 GATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 20535 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| ||| || || || | ||||| || ||||| || || || || || Sbjct 20534 GTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGAC 20475 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 20474 GAAGATCTGCAT 20463 Score = 123 bits (136), Expect = 3e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 20198 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 20139 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 20138 GATGAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 20080 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || || | |||||||| || || ||||| Sbjct 20079 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTCAG 20028 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || ||||| || |||| ||||||||||||||||| || Sbjct 20426 CTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 20367 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| ||||| |||| | | Sbjct 20366 GATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACATT 20307 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||||| || || || || | || || || || || || || || || || Sbjct 20306 GTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCAC 20247 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 20246 AAAGATCTGCATT 20234 Score = 116 bits (128), Expect = 4e-21 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 || |||||||||| || ||||| |||| |||||||||||||||||||| || | ||||| Sbjct 19848 TACTGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCT 19789 Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTG 46531 ||||||||| || | || |||||||||| |||||| ||||| ||| | | | ||| Sbjct 19788 GCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTG 19730 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || ||| || || || | |||||||| ||||| || || Sbjct 19729 TCTGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 19689 >seq2 Length=3675159 Score = 123 bits (136), Expect = 3e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 2843002 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2843061 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||||| ||||| ||| Sbjct 2843062 GATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 2843120 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || || | |||||||| |||||||| || Sbjct 2843121 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAG 2843172 Score = 111 bits (122), Expect = 2e-19 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| |||||||||||||||||||| || | |||||||| Sbjct 1356127 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 1356186 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | || |||||||||| |||||| ||||| ||| | | | ||||| Sbjct 1356187 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCC 1356245 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || ||||| || | |||||||| |||||||| || Sbjct 1356246 GAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 1356283 >seq8 Length=1129179 Score = 111 bits (122), Expect = 2e-19 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| |||||||||||||||||||| || | |||||||| Sbjct 496527 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 496468 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | || |||||||||| |||||| ||||| ||| | | | ||||| Sbjct 496467 GGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCC 496409 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || ||||| || | |||||||| |||||||| || Sbjct 496408 GAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 496371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238195101080