Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 215 5e-51 seq2 122 9e-23 >seq6 Length=2185627 Score = 215 bits (238), Expect = 5e-51 Identities = 436/644 (68%), Gaps = 10/644 (2%) Strand=Plus/Minus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAG 132722 |||||| || || ||||| || | |||||| |||| |||||| | ||||||| Sbjct 95038 CATAAAGTCGAATGGGTTTGCAGAGTTGTAAATCTTGTCGTTGCCGAGCG---CGACGAG 94982 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||| | |||||| || ||||| ||||| || ||||| || || | || | || Sbjct 94981 CAGGCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGATGAG 94922 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 || || || || || ||||| || ||||||||| || || || ||| || ||| Sbjct 94921 CGAGACGGGGAGGGCGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGATGAT 94862 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 | | | | | | || || | | || |||| | || ||| ||||| Sbjct 94861 CATGTTGATGGTGTCTGGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAGCAGGCAGGCAAA 94802 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 |||| || | |||||||| | || ||||| |||||| ||| || | |||||||| Sbjct 94801 GTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 94742 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 ||| ||||| || |||||||| || |||| ||| || |||||| ||||||| |||||| Sbjct 94741 GAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTC 94682 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 |||||| || || || | || |||||| | |||| | | ||| | |||||| Sbjct 94681 GACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGACGAGTTCTTGTCAGAAATCCAGTT 94622 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACG 133142 |||||||| |||||||| | |||| ||| || || | || || ||||| ||| | | Sbjct 94621 GAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGCGTTGAAC--AGG 94564 Query 133143 GAGTTTCTCTTCCGA--GGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAG 133200 ||| | | | | || | ||| |||||||||||| ||| ||| | |||||| Sbjct 94563 TAGTGGCGGCGCGCATTGTCGCGAATGTACGTGTCGATGAGGAGCGAGTACGTCTCCGAG 94504 Query 133201 TGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACT 133260 || | ||||||||| ||| || |||||||| || | |||||| | |||||| Sbjct 94503 TGAATGTTCTCCATCATGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATCTGCACC 94444 Query 133261 TCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 || |||||||||||| || || ||||||||||||||||| Sbjct 94443 TCACCGCAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTC 94400 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || || ||||||||| |||| |||||| | | |||| | | | |||| | || Sbjct 20028 CTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAACG-TCAA 20086 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| || || ||||||| ||||| ||||| | ||| || Sbjct 20087 GTCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAGCGCCTCATCTTCGCCGG 20146 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| ||||||||| |||||||||||||| ||||| | || || Sbjct 20147 CAAGCAGCTCGAGGACGGACGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACTCT 20206 Query 38444 GCATTTGGTGCTGCG 38458 || | || ||||| Sbjct 20207 TCACCTCGTCCTGCG 20221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| |||| |||||| | || Sbjct 20463 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCC 20522 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| ||||| | ||||| Sbjct 20523 GACACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 20582 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | || || || |||||||||| Sbjct 20583 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAAC 20642 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || | || || ||| Sbjct 20643 ATCCAGAAGGAGTCGACACTTCACCTCGTCCTCCGT 20678 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || || || || || |||| |||||| | | Sbjct 20234 AATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAG 20293 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||||| | | | || | | |||| || || | ||||| ||||| || || ||||| Sbjct 20294 CGACACCATCGACAATG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGAC 20351 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| ||||| || |||| || || || |||||| Sbjct 20352 CAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTAC 20411 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||||| | || || || | || || ||| || | || || Sbjct 20412 AACATTCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTGCGTGGTGG 20461 >seq2 Length=3675159 Score = 122 bits (134), Expect = 9e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||||||||| ||||||||| | || |||||| || | |||| | | | |||| | || Sbjct 2843172 CTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 2843114 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| || Sbjct 2843113 GTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATCTTCGCCGG 2843054 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| ||||||||| |||||||||||||| ||||| |||| || Sbjct 2843053 CAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 2842994 Query 38444 GCATTTGGTGCTGCGT 38459 || | || || ||| Sbjct 2842993 CCACCTCGTCCTCCGT 2842978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172618687360