Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10 352 4e-92 seq2 178 2e-39 >seq10 Length=842962 Score = 352 bits (390), Expect = 4e-92 Identities = 788/1173 (67%), Gaps = 20/1173 (2%) Strand=Plus/Plus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| || ||||| || |||| || | || ||||| | ||||| | ||| Sbjct 511288 GGGGTCATGATGCCACCAGCGGTCTCGATACCCATGGAGAGAGGGGCAACGTCGAGGAGG 511347 Query 6983 AACAGGTCTTGAACAGATTC---GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 | ||||| || | || | || ||||| | | ||| | ||| ||||| | Sbjct 511348 AGGAGGTCCTGGGTGGCCTCCGAGGTC---TCACCGTTGAGGATCGAGGCCTGGACGGCG 511404 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAA 7098 || ||||| || || ||||| |||||||| |||| || | || || | || Sbjct 511405 GCACCGTAGGCAACGGCCTCGTCGGGGTTGATCGAGCGGTTGGGCTCACGGCCAGAGAAC 511464 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || ||||| | | | || || || ||||| || || || |||||||| | || || Sbjct 511465 ATG-TCCGAGACGAGCTTCTGGATCTTGGGGATACGGGTGGAACCACCGACAAGGACAAT 511523 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || ||||| ||| || || ||||| ||||| || || || || || || ||||| Sbjct 511524 CTCGTTCACCGACGACTTGTCAATCTTCGAGTCGCGGAGGACCTTCTCAACGGGCTCCAT 511583 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || ||||| ||||| |||||||| || || || || Sbjct 511584 GGTCGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGGGCACGGGTGATCGAGGTGTA 511643 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | |||||| | | ||| || || ||||| | || || || | || || | Sbjct 511644 GAAGTCGATACCGTCGAAGAGCGAGTCGATCTCAATCGAGGTCTGAGCGGCAGACGAGAG 511703 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || ||||| ||||| || || | ||| || |||||||| | ||| || Sbjct 511704 GGTGCGCTTGGCACGCTCGCACGCAGTGCGGAGACGGCGGAGGGCACGAGCGTTGGACGA 511763 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG--AAGTG-TCGAAGGAGTCTCGA 7455 || || ||||| | || || || ||||| ||| ||||| |||| | || | Sbjct 511764 GATGTCCTTCTTGTTCTTGCGCTTGAACTC--CAGCTTAAAGTGGTCGACG-AGACGGTT 511820 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || || || |||||||| | || || || || ||||| || ||||| || ||||| || Sbjct 511821 GTCAAAGTCCTCACCACCAAGATGGGTGTCACCGGCGGTAGCCTTGACCTCGAAGATGCC 511880 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | | ||| || || || ||||||||||| ||||| |||||||| || Sbjct 511881 CTCCTCAATGGTGAGGAGCGACACGTCGAAGGTACCACCACCAAGGTCGAAAATGAGAAC 511940 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | || ||||| ||||| ||||| |||||||| || || || || || Sbjct 511941 GTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCCGTAGGCGATAGCGGCGGCGGTAGGCTC 512000 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || || || || ||||| || | || || || || || || || Sbjct 512001 GTTGATGATACGGAGGACGTCAAGACCGGCAATGGTACCGGCGTCCTTGGTGGCCTGACG 512060 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| |||||||| ||||| || ||||| || | || ||| | ||| || Sbjct 512061 CTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCCTTCGAGACGGTGCCACCAAG 512120 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || ||| | || ||||| ||| | || ||||| || || ||||| || | || Sbjct 512121 GTAAGCCTCAGCGGTCTCCTTCATCTTGATGAGGACCATGGACGAGATCTCCTCGGGCGA 512180 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || || || || ||| | || || | || ||| || | | | | Sbjct 512181 GAAGGTCTTGGTCTCGCCGCGGTACTCGACCTGGATGTAGGGCTT---GGTGTCGCGGTC 512237 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || ||||| | | ||| | ||||| ||| ||||| | | ||| | |||||| | Sbjct 512238 AATGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGGACTTCGTTGTCGGCAAACTTGCG 512297 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| |||||||| || || || || ||||| | ||||||||| || |||||||| Sbjct 512298 GCCGATGAGACGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATCGCGACCTGGTTCTT 512357 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||| ||||| ||||| || || || || ||||| || || ||||| || Sbjct 512358 GGCGGCGTCACCGATGAGACGCTC---CGAGTCGGTGAAGGCGACATAGGAGGGGGTGGT 512414 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || || || |||||||| || || || || || Sbjct 512415 GCGGTTACCCTGGTCGTTGGCGATGATCTCAAC 512447 >seq2 Length=3675159 Score = 178 bits (196), Expect = 2e-39 Identities = 325/476 (68%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | |||| || ||| | | | | ||| || Sbjct 2958235 TCCTCGAAACGGGCACGGGTGATGTTGGCCGAGAAGTCGGTGCCCTGGAAGAGCGAGTCG 2958294 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || |||||||| |||| Sbjct 2958295 ACCTCGACGGTGGTCTGGGTGACCGACGAGAGGGTGCGCTTGGCACGCTCACAGGCCGAA 2958354 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | |||||| || ||||| |||| | || || || ||| | || || || ||| Sbjct 2958355 CGGAGACGACGGAGAGCACGGGGGTCCTCCGAGATGTCAAGCTTGTTCTTGCGCTTGAAC 2958414 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| | ||||| || |||||||| | ||| || || Sbjct 2958415 TCGGCCTTGAAGTGCTCAAGGAGGGTGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 2958474 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | |||| ||| || || | | ||| ||||| || Sbjct 2958475 CCAGCGGTGGCCTTGACGGCGAAGACACCACCGGTGATCGAGAGGAGCGAGACATCGAAG 2958534 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGA 7606 ||||||||||| ||||| || ||||| |||||| | || || | | |||| || ||| Sbjct 2958535 GTACCACCACCAAGGTCGAAGATGAGGACGTTCTTCTCCTCCTTGGTCTTCTGGTCAAGA 2958594 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 ||||| || || || || || || || || || || ||||| ||| || ||||||||| Sbjct 2958595 CCGTAAGCAATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTCGAGGCCAGCA 2958654 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | | || || || || || | || ||||| ||||| |||||||| ||||| Sbjct 2958655 ATGGCACCGGCGTCCTTGGTAGCAAGACGCTGCGAGTCGTTGAAGTAGGCGGGGAC 2958710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132569764360