Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 188 9e-43 seq6 140 4e-28 seq2 134 2e-26 seq3 98.7 1e-15 >seq5 Length=2501492 Score = 188 bits (208), Expect = 9e-43 Identities = 679/1052 (65%), Gaps = 39/1052 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| || |||||||| || || | ||||| || Sbjct 909608 CCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAACATTGAGAAGGTG 909549 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || ||||| || |||| |||||| | |||||||||||| Sbjct 909548 CTCGACACGTACAACCTCATGTCGGAGCGTTACTTCACCCACGCGTCGCCAACCCTCTTC 909489 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||||| ||||| || || || | || | ||||| || Sbjct 909488 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGCCATGAAGGACGAC 909429 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | ||||| |||| ||| |||| || || || ||||| ||| |||||| Sbjct 909428 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCTGGT 909369 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAA 111909 |||||||| | |||||||| | | | |||| | | ||||| ||| ||||| | Sbjct 909368 GGTATCGGTCTCCACATCCACAACATTCGCGCCA--AGGGCTCGTACATTGCCGGTACCA 909311 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || | || | ||||| | || ||||| |||| | ||||||| || || || | Sbjct 909310 ACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTACG 909251 Query 111970 TAAACCAAGCTGGGCGTC-GCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 112022 | |||| ||| | | |||| || | |||| |||| || ||||| ||| Sbjct 909250 TCGACCA----GGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGG 909195 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGC 112080 ||||| || | | || ||||| || | || ||||| || | ||||||| ||| Sbjct 909194 CACGCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGC 909135 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | | || || ||||||| |||||||||||| || || || ||||||||| | || |||| Sbjct 909134 GCT--CGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGG 909077 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| | ||| | ||| | || || | | || ||||||||| |||| | | Sbjct 909076 CCGACGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACT 909017 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG------AAAGTCGGGCGACTG 112254 ||||||||||| |||||| | ||||||| | | |||| ||| Sbjct 909016 CGGAGGAGTTTGAGAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCGCAAGACCA 908957 Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 | || |||| || | ||| || || ||| || | || |||||||||||| Sbjct 908956 TCAAGG-CCCAGAAGC-----TCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTG 908903 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAG--AGT--AATCAAAAGAATTTG 112370 || | ||||| ||||| |||| ||| |||| || ||| || || || | | Sbjct 908902 GTCCCTTCATGCTCTACAAGGACG-CTG---CCAACAGCAAGTCCAACCAGCAGCACCTC 908847 Query 112371 GGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 || |||||| ||||||||||| || || ||| | || | | | | || ||| Sbjct 908846 GGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAG 908787 Query 112431 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 112490 || || || ||||| || || || || ||||| || ||| || |||| || Sbjct 908786 GTCGCCGTCTGCAACCTGGCCTCGATTGCCCTCCCTGCGTTTGTCGACATTGAGAGCCAG 908727 Query 112491 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550 | | || | | | || || ||||| | || || ||| || || ||||| || Sbjct 908726 TCGTACGACTTTAAGAAGCTGCACGAGATCACCAAGGTTGTGACCAAGAACCTCGACCAG 908667 Query 112551 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 || || | || | |||||||| ||| ||||| || || ||| | ||||| Sbjct 908666 GTCATCACCAAGAACTACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGC 908607 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 || | |||||||| || |||||||| || || Sbjct 908606 CCCGTCGGTCTCGGCGTGCAAGGTCTTGCCGA 908575 >seq6 Length=2185627 Score = 140 bits (154), Expect = 4e-28 Identities = 169/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 |||| |||| || || | ||||| || || ||||| | || ||| || | |||| Sbjct 94583 AACA-TTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGACAAGAA 94641 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | ||| | ||||| ||||| || |||| ||||| || ||||| ||||||||||| | Sbjct 94642 CTCGT-CGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGG 94700 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | || || | | || | |||||||||||||| ||||||||||| |||||| ||||| Sbjct 94701 GCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCT 94760 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||| ||||| || |||||||| |||||| || ||||| Sbjct 94761 CCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGC 94806 Score = 114 bits (126), Expect = 2e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 |||||| | ||| |||||||| || ||||||| |||||| || || | || ||| Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||| || || || |||||| || || ||||| ||||||||||||||||| | | Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | | ||| | || ||||||||| || | || || || |||| ||||| || | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||| ||||| ||| |||| | || ||| ||||| ||||||||||| || Sbjct 1167850 TCTTACCGGTACCGGGCGGGCCCGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq2 Length=3675159 Score = 134 bits (148), Expect = 2e-26 Identities = 289/427 (68%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || || |||||||| || | ||||||||||||||||||||| | || || | |||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 175960 || ||||| ||| | | ||||| || ||| | |||||| | | || | | ||||| Sbjct 3085082 TCGGGCTCGATGCGCTGGCCATCATCGACCAGGTGGTTGAGGA---GCTCGT-TGTCGGA 3085137 Query 175961 ----TCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 176015 | ||||| | | | |||||| | || || || || || || | | | Sbjct 3085138 AGGGTGGAAGATGGTGTGAGTCATCTTGGG-GATGTTGGTGAAAATGTAACGAGGGCTGG 3085196 Query 176016 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 |||||||| |||||| || ||||||||| |||||||| ||| || || |||| Sbjct 3085197 CAGCATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGA 3085256 Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTT 176135 | ||||| |||| ||||| | || | |||||| || |||| || ||| Sbjct 3085257 TGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTT 3085316 Query 176136 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 176195 ||||||||||||| ||| | ||||| | |||| | | | | ||| || || || |||| Sbjct 3085317 CACCGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCT 3085376 Query 176196 CATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 176255 | | |||||| || | ||| || || |||| |||||||| || |||||||| | Sbjct 3085377 CCTGCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGC 3085436 Query 176256 CATCCGC 176262 | ||||| Sbjct 3085437 CGTCCGC 3085443 >seq3 Length=3502833 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || || || ||||| ||||| |||||||| ||||| || ||| || || | ||| | Sbjct 1064900 GCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTG 1064959 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||||| || ||||||| || ||| ||||||||||||||| ||||| || |||||| Sbjct 1064960 AAGAAGCGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 1065019 Query 102312 GG 102313 || Sbjct 1065020 GG 1065021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742174980880