Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 136 5e-27 seq3 86.0 7e-12 >seq6 Length=2185627 Score = 136 bits (150), Expect = 5e-27 Identities = 331/489 (68%), Gaps = 27/489 (6%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | || ||| || || | || ||||| Sbjct 1168209 AATGTGACGGTCGAAACGGCCAGGACGCATGAGCGCAGAGTCGAGCACGTCCGGTCGGTT 1168150 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA--CCGTCCATTTCTGTGAGA 11613 ||| |||| | || |||||| || ||||||| | |||||||| || ||| Sbjct 1168149 GGTACCGGCCAGAACGACAATGTGCTCCT--TTGTCGAGAAGCCGTCCATCTCGACGAGG 1168092 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGAA 11667 | |||||||| ||| || ||||| |||||| | || || | | |||| | Sbjct 1168091 ATCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC-CAAACTGTCCGCCCTTGCC--A 1168035 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 ||| ||| |||| ||||||||||| |||||||| | ||| || || ||| ||| Sbjct 1168034 CGCGCCTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGT 1167975 Query 11728 GCCTGTTCGAAAA--GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 || | ||| ||| | || || |||||| || || ||||| || |||||||| || | Sbjct 1167974 GC--GGTCGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAA 1167917 Query 11786 AGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | | || ||| || | |||||| || || | ||| || ||| |||| ||| Sbjct 1167916 ACTCGGAACCCGA-CACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCG 1167858 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG--GGCGCCACGGGGGATCTTGG 11902 ||||| |||||||| ||||| || | || ||| ||| ||| || || || ||||||| Sbjct 1167857 AGGAGCGTCTTACCGGTACCGGGCGGGCC--CGACAAGATGGCTCCTCGAGGAATCTTGG 1167800 Query 11903 CACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTC 11960 |||| |||| ||| || |||| ||||||||| | |||| |||| || || Sbjct 1167799 CACCGAGCTTC--TCGTACTTCTGCGGCTCCTTGAGGAACTTGACAAACTCCATAATCTC 1167742 Query 11961 CTCCTTGGC 11969 ||||||||| Sbjct 1167741 CTCCTTGGC 1167733 Score = 109 bits (120), Expect = 6e-19 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || |||| || || Sbjct 94807 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACC 94748 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| ||| || || |||||||| Sbjct 94747 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGAT 94688 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC-GAA- 119671 |||||| || ||| || |||| |||||||| || ||| | |||| |||||| ||| Sbjct 94687 GCCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGC-AAACGACGAGTTCTTGTCAGAAA 94629 Query 119672 -CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGG 119710 ||| ||||| ||||||| |||||| || |||||||| Sbjct 94628 TCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGG 94589 >seq3 Length=3502833 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || || ||||||||||| || |||| || ||| |||||||||| | ||| Sbjct 1065021 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTC 1064962 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || | ||| ||||||||| || |||||||||||||| ||||| ||||| ||||| Sbjct 1064961 TTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAGAAGATCCCCTCGACACAAGCGAAC 1064902 Query 119634 GC 119635 || Sbjct 1064901 GC 1064900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975786496200