Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 199 5e-46 seq2 149 7e-31 seq6 127 2e-24 seq3 86.0 7e-12 >seq5 Length=2501492 Score = 199 bits (220), Expect = 5e-46 Identities = 681/1050 (65%), Gaps = 35/1050 (3%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || |||||||| || || | ||| | || | ||| ||||| || || || || Sbjct 908575 TCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 908634 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 ||| ||||| || | || || ||||| ||| || || ||||| |||| ||| Sbjct 908635 TCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTG 908694 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT-TCATTG---ACATACTT 106455 ||||| || || || || | | | || || ||| | || ||| || ||| || Sbjct 908695 GTGATCTCGTGCAGCTTCTTAAAGTC----GTACGACTGGCTCTCAATGTCGACAAACGC 908750 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || ||||| || || |||| ||||| || || ||| || | | |||||| | Sbjct 908751 AGGGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGAT 908810 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 || || || || | |||||| ||| || || || | | || ||||| ||| | Sbjct 908811 GATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCT 908870 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 |||| || ||||||||||||||| |||| || ||||| ||||| | || ||| || Sbjct 908871 GTTGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGAT 908930 Query 106636 TGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGT 106691 || ||| | | || | | || | |||| ||| ||| | || | ||||||| Sbjct 908931 GGCAAACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCGGCAGCCTCGT 908986 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTT 106749 | | |||||| ||||||||||| | | | |||||| |||||| || || Sbjct 908987 AGCTCTCGTAGAGCTTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGACCGGGGCACTC 909044 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | | || || | || | ||| | || | |||| || ||||||||||||||||| || Sbjct 909045 GGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGG 909104 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||| || | | ||||| || | | ||| |||| || | || ||||| || Sbjct 909105 GATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 909164 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------T 106923 | || ||||| || | | || |||||||| ||||| || |||| |||| Sbjct 909165 GAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACC 909224 Query 106924 AGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 || | ||| | | | ||| || | || || || || ||||||| | |||| | Sbjct 909225 AGGGCGCTTGTTGCCTCCC----TGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGA 909280 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGC 107040 |||| || | ||||| | || | || || || || || |||||| ||||| Sbjct 909281 GCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAG--CCCTTGGC 909338 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 | | | |||||||| | || ||||| ||||| ||| ||||| || || || Sbjct 909339 GCGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGT 909398 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | ||||| |||| || ||||| ||||| |||||| || ||||| Sbjct 909399 CTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGA 909458 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||||||| || || ||||| || |||||||||||||| | ||||| |||| Sbjct 909459 CGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTA 909518 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 || | ||||| || ||| || || | || ||||||| || |||||||| || Sbjct 909519 ACGCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACC 909578 Query 107281 GATGGCCACACGCATAAACATGTATTGGGG 107310 || || |||||||| | ||||| ||||| Sbjct 909579 AATAGCGACACGCATGATCATGTGCTGGGG 909608 >seq2 Length=3675159 Score = 149 bits (164), Expect = 7e-31 Identities = 294/427 (69%), Gaps = 6/427 (1%) Strand=Plus/Plus Query 168289 ATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAA 168348 |||| || |||||||| || | || |||||||||||||| || | ||| || | ||| Sbjct 3085020 ATCCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGT 3085079 Query 168349 AGTCTGGTTCAATTGAGC-GCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407 | || || || | || || | |||||||| ||| || |||||||| | || || | Sbjct 3085080 ACTCGGGCTCGA-TGCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAA 3085138 Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGT-ACCTCGTCTGAG 168465 || | ||||| || ||| | |||| || | | || |||||||||| || | ||| | Sbjct 3085139 GGGTGGAAGATGGTGTGAGTCATCTTGGGGATG-TTGGTGAAAATGTAACGAGGGCTG-G 3085196 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 ||||||||| |||||| || ||||||||| || ||||| || || ||||| | Sbjct 3085197 CAGCATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGA 3085256 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTT 168585 ||||||| ||| ||||| | || | ||||| || | | ||| ||| Sbjct 3085257 TGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTT 3085316 Query 168586 CACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTT 168645 |||| |||||||| |||| || || | |||||| | | || || || ||||| || | Sbjct 3085317 CACCGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCT 3085376 Query 168646 CATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGAC 168705 | | |||||| || | |||||| ||| ||||||| || | ||| |||||||| | Sbjct 3085377 CCTGCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGC 3085436 Query 168706 CATCCGC 168712 | ||||| Sbjct 3085437 CGTCCGC 3085443 >seq6 Length=2185627 Score = 127 bits (140), Expect = 2e-24 Identities = 264/388 (68%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| || || || | ||| |||||||||||| | |||| | | | |||||| ||||| Sbjct 94984 GAGCAGGCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGAT 94925 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| ||||| || |||| ||| ||| ||| |||| ||||| | Sbjct 94924 GAGCGAGACGGGGAGGGCGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGAT 94865 Query 117216 GATGGCGTGGATAGTTTCGGTAGTG-GGTCTATTACGCAAAGTCTTGAAGAGCTCCACGG 117274 ||| || ||| || || | ||| || | || | |||||||| || Sbjct 94864 GATCATGTTGATGGTGTCTGG-GTGAGGGCGGCGGCGGAGGTGGGTGAAGAGCAGGCAGG 94806 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 |||| || |||||||||||| || || || || || || || |||||| || || | Sbjct 94805 CAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 94746 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 117394 |||||||||| |||||||| | ||| | || | | || || || ||||||||||| | Sbjct 94745 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGC 94686 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA-C 117453 |||| || ||||| || | ||| |||||||| || || |||| |||| ||| | Sbjct 94685 CCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGA-CGAGTTCTTGTCAGAAATC 94627 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCT 117481 || || | ||||| | |||||||||| Sbjct 94626 CAGTTGAGCGCCCAGTCGGCCTTCTTCT 94599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 |||||| | ||| |||||||| || ||||||| || || || || | || ||| | Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||| || ||||| || | || || ||||| ||||||||||||||||| | | Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 9482 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | ||| | || ||||||||| || | || || || |||| ||||| || | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||||| ||||| ||| |||| | || ||| || || ||||||||||| || Sbjct 1167850 TCTTACCGGTACCGGGCGGGCCCGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq3 Length=3502833 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || || || || || || || |||||| ||||| ||||||| || |||||| Sbjct 1065021 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTC 1064962 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||||||| | || || ||| || || || |||||||| ||||| ||||| || ||| Sbjct 1064961 TTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAGAAGATCCCCTCGACACAAGCGAAC 1064902 Query 117412 GC 117413 || Sbjct 1064901 GC 1064900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980586131960