Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq2 82.4 5e-11 >seq6 Length=2185627 Score = 107 bits (118), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||||||||| |||||||| || | || | || || ||||| Sbjct 20438 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTG 20379 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || |||||||| || || || |||||||| | || | ||||||||||| |||||| Sbjct 20378 CTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTT 20319 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 || || || | ||||| || | | ||| || |||| || || || |||| Sbjct 20318 GCTCTTCAC--AT--TGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTC 20263 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| |||||||||||||||||||| Sbjct 20262 CGGTGAGGGTCTTCACAAAGATCTGCAT 20235 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| || || | || |||| || ||||| Sbjct 20666 GTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTG 20607 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || || || |||||||| | || | ||||||||||| |||||| Sbjct 20606 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 20547 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| | |||| || | ||| || |||| || || || || || || Sbjct 20546 CGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGT 20487 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| || |||||||||||| Sbjct 20486 GAGGGTCTTGACGAAGATCTGCATA 20462 >seq2 Length=3675159 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || Sbjct 2843003 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 2843062 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 2843063 ATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 2843122 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 | || | || || ||| || || | ||| ||||| || |||||||| Sbjct 2843123 TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAG 2843172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633485262312