Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 343 3e-89 seq6 275 1e-68 seq3 111 3e-19 >seq5 Length=2501492 Score = 343 bits (380), Expect = 3e-89 Identities = 1187/1830 (65%), Gaps = 51/1830 (3%) Strand=Plus/Plus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 ||| || | ||| || ||||| |||||| ||||| | | | | ||| || || | ||| Sbjct 907968 CAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAACGCGCCACGGTCGGCCGCAAGGTC 908027 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 |||| | | |||| || | |||||| || |||||| | ||| | ||||| || ||||| Sbjct 908028 AATGACAGCCTTCTGCGACACCTCCCAAACAGTCTTGTAAATTGCCTTGAGCTCATCTGG 908087 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTC 212863 | | ||| |||| ||| | || || || | | ||| | || | | |||||| Sbjct 908088 AATGTTGGGAATGTGCTGGATCGAGCCACCGGAGGCAATGATGAGGTTCTT---CATGTC 908144 Query 212864 CTCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTTGACCAGGTGAGGGTTGACTATCTGGA 212922 ||||| ||||| |||| | | ||| ||| || || ||| ||| | ||||| Sbjct 908145 CTCGTCCCAGATGCCCAGGTTGATGAGGTCACG-GAGGAGCCAGGGGCAGACGACCTGGA 908203 Query 212923 AGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGT 212982 ||||||| |||||||| | | ||| | | || ||||||||||||| || ||||| Sbjct 908204 AGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTGTAGGGCTCGAAGCACTCGT 908263 Query 212983 TGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCC 213042 | || || ||||| | || ||| ||||||||||| || || ||||| ||| | Sbjct 908264 TCCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGCATGGGCGCGACAAGGAGCGAGTTGC 908323 Query 213043 TCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGG 213101 || ||||||| ||||| ||||| || |||| | ||||||||| | | | || Sbjct 908324 GGACACCGTGCTGAGCGATGTTGGCGCGGA-GCTCGGTCCAGTCCCAGAGGTCGGTG-GG 908381 Query 213102 TCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCC 213161 | || || ||| | ||| || | | || | | || |||| Sbjct 908382 CACACGGCC--------CCAGAGGTCGGGTTGGAGCTTACCCTGCGAGATAGGCGAGCCC 908433 Query 213162 TGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCG 213221 | ||| | || ||| |||| ||||| ||||| |||||| |||| || ||||||||| Sbjct 908434 TCGTAGGTGGGGTACTTGCCAAACTCCTGGGCCATCTCGCACGACGACTCGAGGGCAGCG 908493 Query 213222 TAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGC 213281 | ||||||||| ||||| |||| ||| |||| ||| | || || ||||||| Sbjct 908494 TGGTAGATGGTCTCAAAGATCTTGAGGTTAAGCTCACGGGCGGCAGGCGAGTCGAAGGGC 908553 Query 213282 ATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 || | || || || || || || || || || |||| |||| ||| | ||| Sbjct 908554 ATGCGGAGAGCCATG-AAGGTGTCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTG 908612 Query 213341 TCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 | || ||| ||| |||| |||||| | |||||| |||| | ||||| || || Sbjct 908613 GCGCATGTTGCTGTTGCGAGC-CTCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGT 908671 Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC 213459 |||||| ||| | || ||||||| | | ||| | || | | || | || Sbjct 908672 CGAGGTTCTTGGTCACAACCTTGGTGATCTCGTGCAGCTTCTTAAAGTCGTACGACTGGC 908731 Query 213460 CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519 | | | |||||| |||| ||||| || |||||||||||| ||||| ||||| | Sbjct 908732 TCTCAATGTCGACAAACGCAGGGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGT 908791 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 | | | | |||||| |||||||| ||||| |||||| | ||||||||| |||| Sbjct 908792 CGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT 908851 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCT 213639 ||| ||||| ||||| |||||||| ||||||||||||||| |||| || |||| Sbjct 908852 GCTGCTGGTTGGACTTGCTGTTGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCT 908911 Query 213640 CTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC 213697 | ||||| | | || | |||| |||||| | | |||||||| | | ||| Sbjct 908912 CGGTCTGGGCCTCGAGGA--TGGCAAACCAGAGCTTCTGGGCCTTGATGGTCTTGC-GAC 908968 Query 213698 AGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA---GAC 213754 | | ||| ||||||||| |||||||||| | || || | || | ||| Sbjct 908969 CCTTGCCGGC--AGCCTCGTAGCTCTCGTAGAGCTTCTCAAACTCCT---CCGAGTGGAC 909023 Query 213755 CCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 | | || || || || || || ||||||||| ||||||| ||||| | ||| Sbjct 909024 GTCGGCGAGACCGGGGCACTCGGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGAC 909083 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || |||||| ||||| |||| ||| || ||| ||| ||||| | | | ||| Sbjct 909084 ACGCTTCATGAAAAGGTCGGGGATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTC 909143 Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| || ||| ||||| || || || ||||| || | ||| |||||||| ||||| Sbjct 909144 CTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTC 909203 Query 213935 CATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | ||||||||| || || || | || | ||||| |||||||| || | ||| Sbjct 909204 GAGGTAGATGGCGAACGCACCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGT 909263 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 || | || ||| || | ||| || | ||||| || | |||||||| || || || Sbjct 909264 GGCGTCGTAGGCGCGGAGCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAAT 909323 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 |||||||| ||| | | |||| ||| ||| || || ||||| || |||||| Sbjct 909324 GTACGAGCCCTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGA 909383 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTT 214171 |||| |||||| | | | || || ||||||| | || ||| || | | | Sbjct 909384 GATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGC 909443 Query 214172 CAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCT 214231 | | ||||| ||| | |||||| || | || | |||||| || || || Sbjct 909444 GACGAGAAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGA 909503 Query 214232 GGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTC 214291 || ||| | | | | || | ||| |||| || || || || |||| Sbjct 909504 CGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTT 909563 Query 214292 GTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCC 214351 || |||||| | |||| | ||| | |||||||||||| | ||| | | || Sbjct 909564 GTCGCCGTGGATACCAATAGCGACACGCATGATCATGTGCTGGGGACGCTC--GGCGACC 909621 Query 214352 TTTGGGGCCCTTG------AGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGA 214405 || ||| ||| || ||||| |||||||| || |||||||| ||||||||| Sbjct 909622 TT----GCCGTTGATGCGCAGGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGTT 909677 Query 214406 GTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTCTTGGCT 214465 ||| | | ||| ||| |||| ||| | ||| ||| | ||| ||||| ||| Sbjct 909678 GTACGAAAAGTCGCGGTCGTAGATGATGGCCGAGTCGAGCACCTCCTTGTGCTTCTGGAC 909737 Query 214466 CAGCTTGAAAATCTCGTCCGAGATCAAGGG 214495 | || | | | |||||| ||||| ||| Sbjct 909738 GACCTCGTACACCTCGTCGCTGATCATGGG 909767 >seq6 Length=2185627 Score = 275 bits (304), Expect = 1e-68 Identities = 482/691 (70%), Gaps = 17/691 (2%) Strand=Plus/Minus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||||| ||| |||| | |||||| ||||||| ||| ||| ||||| | Sbjct 95077 CTCGAAGAAGTTTGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAATGGGTTTGC 95018 Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978 | ||| || | | |||| ||| | | | |||||| | || ||||| |||| | Sbjct 95017 AGAGTTGTAAATCT-TGTCGTTGCCGAGCGCGACGAGCAGGCGGTCGGCGACAAACTCAA 94959 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | ||||||| | | ||||||||| ||||| || ||||| | || | ||||| Sbjct 94958 TGTACTGGCACATGAGCGCGGCGTTCATGCCGATGAGCGAGACGGGGAGGGCGTCTGTGA 94899 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTC--TGA 48096 | ||||| | ||| ||| ||||| || | | ||| || | | | | || ||| Sbjct 94898 GGAACTCTTGCTCGATCGCAACGGCCTCGCGGATGATCATGTTGATG-GTGTCTGGGTGA 94840 Query 48097 GGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 ||| | ||| ||||| || |||||| |||||||||||| |||| | || || Sbjct 94839 GGGCG-GCGGCGGAGGTGGGTGA---AGAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTC 94784 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 ||| || ||||||| ||||||||||| |||||| ||||||| || | || ||||| Sbjct 94783 GTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAG 94724 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| || | || || ||||| ||||||||||||||||| || || || || ||| | Sbjct 94723 CCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGAT 94664 Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 || | ||| | || || | ||||||||| || |||||| ||||||||||| ||||| Sbjct 94663 AAGACGCTCGGCAAACGACGAGTTCTTGTCAGAAATCCAGTTGAGCGCCCAGTCGGCCTT 94604 Query 48337 CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC-ACTCACCTGCGT 48395 |||||||||||| || || |||| || || ||| || | | || | | | | || Sbjct 94603 CTTCTTGATGCAGGGAATGTTCTCAATCGCGTTGAACAGGTAGTGGCGGCGCGCAT-TGT 94545 Query 48396 CCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 | || || || |||| ||| | |||| |||| ||||| | ||||| || Sbjct 94544 CGCGAATGTACGTGTCGATGAGGAGC---GAGTACGTCTCCGAGTGAATGTTCTCCATCA 94488 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 ||||||||| |||||||| | | ||||||| | |||||| || | |||| | || Sbjct 94487 TGATCTGGAAGCCGTAGAATGTCTTGGCCTCGGGAATCTGCACCTCACCGCAGAAACGCT 94428 Query 48513 CCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | || ||||| ||||| || || || || Sbjct 94427 CGACAAGGTTCTCGTTGACGATGCCGTCAGA 94397 >seq3 Length=3502833 Score = 111 bits (122), Expect = 3e-19 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 48001 GTTCATGCCTATGAGGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 ||| || || || |||| |||||| || |||| |||||| ||||||||||| |||| | Sbjct 1065169 GTTGATACCGATCAGGGCACACGG-CAGCGCCTCTGTGAGGAACTCCTTCTCAATCTCAA 1065111 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119 | || || | | |||| | || | ||| | | || || ||||| | Sbjct 1065110 CTGCCTCGCTGATAATCGTGTGGACCTCGTCCTCGGTGCATTGGTGCTTGAGGTG---GC 1065054 Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 | || || | ||||||||||| | || ||| ||||| || ||||||| |||||| Sbjct 1065053 CGTACAGGAGACAGGCAAAGTCGGTATGTGTGCCCTCGTCGCGCGAGATGAGCTCGTTGG 1064994 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| ||| ||| |||||| || | || || | |||||| || || ||||| |||| Sbjct 1064993 AGAAGGTGAGGCCACGCATGAGTCCGCGCTTCTTCAACCAGAAGATGGCAGCGAACGAGC 1064934 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| |||||||| ||||| || |||||||| Sbjct 1064933 CAGAAAAGAAGATCCCCTCGACACAAGCGAACGC 1064900 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 38966 CTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACT 39025 |||||| | |||||||| |||||| ||||||| ||||||||||||||||| | | | Sbjct 2531729 CTCCCAGCGGTTGGCGGCGAAGAGAAGGTGGATGGCGTGGTCGTCCAGCTCGGCCGTGGA 2531670 Query 39026 CTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGG 39073 || ||||| | | ||||||||| |||||| | ||||| | ||| || Sbjct 2531669 CTGGAGGTAGGCGTTGATCATCTGTCCGATCGCTGTGGTGCGGTCTGG 2531622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532462319360