Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 316 4e-81 seq6 219 8e-52 seq3 91.5 3e-13 >seq5 Length=2501492 Score = 316 bits (350), Expect = 4e-81 Identities = 845/1276 (66%), Gaps = 43/1276 (3%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-CGGGAGA 221478 |||||||||||||||||||||||||||||| | ||| || ||| || | | || || Sbjct 908485 AGGGCAGCGTGGTAGATGGTCTCAAAGATCTTGAGGTTAAG-CTCACGGGCGGCAGGCGA 908543 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||||| || || | ||| |||||| || || || || |||| ||||| Sbjct 908544 GTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCAAGACCTTGCACGCCGAGACCGAC 908603 Query 221539 GGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||| | ||| | | ||||| | ||| | || || | ||||| || |||| | | Sbjct 908604 GGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTCG-ACGGGGTAGTAGTTCTTGGTG 908661 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | | || ||||||| || | || || | |||| |||||||| | | Sbjct 908662 ATGACCTGGTCGAGGTTCTTGGTCACAACCTTGGTGATCTCGTGCAGCTTCTTAAAGTCG 908721 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || ||| || || | | | || ||||| || ||||||| |||| Sbjct 908722 TACG---ACTGGC-----TC-TCAATG---TCGACAAACGCAGGGAGGGCAATCGAGGCC 908769 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 ||||| || ||||| |||||||| | | |||| |||||||| || ||||||||| Sbjct 908770 AGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTG 908829 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||| || ||||| | || || ||||||| |||||||||||||||||| Sbjct 908830 GACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCTGTTGGCAGCGTCCTTGTAG 908889 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG 221896 ||||| |||||||| |||||||| ||| ||| | || || |||||| | |||| Sbjct 908890 AGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCT-TCTG 908948 Query 221897 GCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 | || | ||| | |||| | ||| ||||| | || || ||| Sbjct 908949 GGCCTTGATGGTCTTGCGACCCTTGCCGGCAGCCTCGTAGCTCTCGTA---------GAG 908999 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | ||||||| || || | ||| | || || || ||| ||| || ||||| || Sbjct 909000 CTTCTCAAACTCCTCCGAGTGGACGTCGGCGAGACCGGGGCACTCGGCAGGGCACATGAG 909059 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||||| || | | | ||| | || |||||| ||||| |||||||| || || | Sbjct 909060 GGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGGGATCCAGAGAGCGTA 909119 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||||| || | | || ||||||| ||||| ||| || | || || | || || Sbjct 909120 GAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTC 909179 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | ||| |||||||| ||||| || |||| ||| | || || || ||||||||||| Sbjct 909180 GAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACCAGGGCGCTTGTTGCC 909239 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || || | | |||| | || ||| || | || || | ||||| Sbjct 909240 TCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGGACGATACCGTT 909299 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309 || |||||||| || |||||||| || ||| | | ||| ||| | Sbjct 909300 CGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTG-TGGATGTGGA 909358 Query 222310 G-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 | ||||||||||| || || |||||| |||||| ||||||| ||||| ||||| Sbjct 909359 GACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGC 909418 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || ||||| ||||| | | | ||||| || ||||||||||| | | || || Sbjct 909419 CGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACGACATCTGGGGGTGGGGGG 909478 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || |||||| || || || || ||||| || ||||| | | ||||| || | || Sbjct 909479 TACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGT 909538 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 |||| || | || | | |||||||| ||||| || || ||| | |||| || Sbjct 909539 ACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAATAGCGACACGCATGATCA 909598 Query 222549 TGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| | || ||||| | || | || |||||||| || | Sbjct 909599 TGTGCTGGGGACGCTCGGC--GA-CCTTGCCGTTGATGCGCAGGAGGTACGAGCGCTCGA 909655 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665 | |||||||| |||||||||||| |||||| | | ||| | | ||| | ||| | Sbjct 909656 GGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCGCGGTCGTAGATGATGGCCGAGTCGA 909715 Query 222666 GCTCCGACTTGTGCTT 222681 || || ||||||||| Sbjct 909716 GCACCTCCTTGTGCTT 909731 >seq6 Length=2185627 Score = 219 bits (242), Expect = 8e-52 Identities = 456/686 (66%), Gaps = 9/686 (1%) Strand=Plus/Plus Query 25618 TCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTG 25677 ||||| || || || |||||||| || |||| | ||| | | || |||||| Sbjct 94397 TCTGACGGCATCGTCAACGAGAACCTTGTCGAGCGTTTCTGCGGTGAGGTGCAGATTCCC 94456 Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 ||||||||| |||||||| |||||||| || || || | ||||| ||| ||| Sbjct 94457 GAGGCCAAGACATTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTAC 94516 Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794 | ||| || || ||||||||| ||| || | | ||||| Sbjct 94517 TC---GCTCCTCATCGACACGTACATTCGCGACAATGCGCGCCGCCACTACCTGTTCAAC 94573 Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 || || ||| |||| ||| ||||||||| |||||| ||||| | || ||||| Sbjct 94574 GCGATTGAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCT 94633 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | ||| | | |||||| |||||| || | |||||||| || || ||||||||||| Sbjct 94634 GACAAGAACTCGTCGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTC 94693 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| ||||||||||||||||| || || ||||||||| || Sbjct 94694 TTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTC 94753 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| ||||||||||||||| | |||||||||||||||| || |||||||||||| Sbjct 94754 ACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTG 94813 Query 26035 CTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAA 26094 |||| ||| |||| | | || | ||| | ||| ||| || ||| |||||| Sbjct 94814 CTCTTCAC---CCACCTCCGCCGCCGCCCTCACCCAGACACCATCAACATGATCATCCGC 94870 Query 26095 GAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGC 26154 ||||| || | ||||||| | ||||| | | ||| Sbjct 94871 GAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGGC 94930 Query 26155 ATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAG 26214 |||||| | |||||| |||| |||||||||| ||| ||||||| ||||| | | Sbjct 94931 ATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGCG 94990 Query 26215 CTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCG 26274 || || || || | |||| | | ||||| |||||||||||||| | || ||| Sbjct 94991 CTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTCG 95050 Query 26275 TTGGAAGGGAAGACCAACTTCTTTGA 26300 | | || ||| | |||||||| || Sbjct 95051 CTCCAGGGCAAGGCAAACTTCTTCGA 95076 >seq3 Length=3502833 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 ||| || |||| || ||| ||| ||||| ||||| || || ||||| || |||||| Sbjct 1064891 CGGTTGATAGCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATC 1064950 Query 25939 TTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||| | ||| || | |||| ||||| || || ||| ||||||||||||||| Sbjct 1064951 TTCTGGTTGAAGAAG-CGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTC 1065009 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | |||||||| || | || |||||||| || || ||| |||||| | || Sbjct 1065010 GCGCGACGAGGGCACACATACCGACTTTGCCTGTCTCCTGTAC---GGCCACCTCAAGCA 1065066 Query 26058 CAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 | || | | || ||| ||| || |||| ||||| || ||||| |||||||| Sbjct 1065067 CCAATGCACCGAGGACGAGGTCCACACGATTATCAGCGAGGCAGTTGAGATTGAGAAGGA 1065126 Query 26118 GTT 26120 ||| Sbjct 1065127 GTT 1065129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844463293760