Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 172 7e-38 seq2 147 3e-30 seq6 127 2e-24 seq3 86.0 7e-12 >seq5 Length=2501492 Score = 172 bits (190), Expect = 7e-38 Identities = 675/1050 (64%), Gaps = 35/1050 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| || || |||||||| || ||||||| || Sbjct 909608 CCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAACATTGAGAAGGTG 909549 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || || ||| || ||||| | || |||| ||||| | |||||||||||| Sbjct 909548 CTCGACACGTACAACCTCATGTCGGAGCGTTACTTCACCCACGCGTCGCCAACCCTCTTC 909489 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || || |||||||| ||||| || |||||| ||||| ||| Sbjct 909488 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGCCATGAAGGACGAC 909429 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 909428 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCTGGT 909369 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 75509 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 909368 GGTATCGGTCTCCACATCCACAACATTCGCGCCA--AGGGCTCGTACATTGCCGGTACCA 909311 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || | || | ||||| | || ||||| |||| | ||||||| || || || | Sbjct 909310 ACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTACG 909251 Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | | || | ||| ||| || | |||| ||||| | || || ||||| Sbjct 909250 TCGA-CCAGGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGGCAC 909192 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 ||||| | | || ||||| || | || ||||| || | || |||| ||| | Sbjct 909191 GCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCT 909132 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| | | || ||||| || ||||||||||||||||| || |||| | Sbjct 909131 CGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGGCCGAC 909072 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGTG 75803 || | ||| | || | || || | | || || |||||| |||||| | | | | Sbjct 909071 GGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACTCG--G 909014 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG------AGGGTAGAGCCAATGCGA 75857 |||||||||| |||||| | || || | | ||||| | ||| || Sbjct 909013 AGGAGTTTGAGAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCG---CAA---GA 908960 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | || | | || | | ||| || || ||| | | ||||| |||||||| Sbjct 908959 CCAT-CAAGGCCCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTGGT 908901 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | ||||| |||||||| ||| |||| ||| ||||| || | | || || Sbjct 908900 CCCTTCATGCTCTACAAGGACGCTGCCAACAGCAAGTCCAACCAGCAGCACCTCGGCACC 908841 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 |||||| || || || ||||| || || | |||||| | | || ||| || Sbjct 908840 ATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCC 908781 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGA-AGAGACTCGCAC 76092 || ||||| |||| || || ||||| || || ||| || ||| || | ||| || Sbjct 908780 GTCTGCAACCTGGCCTCGATTGCCCTCCCTGCGTTTGTCGACATTGAGAGCCAGTCGTAC 908721 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 || | | | || || || || ||||| ||| |||| ||||| || || ||| || Sbjct 908720 ----GACTTTAAGAAGCTGCACGAGATCACCAAGGTTGTGACCAAGAACCTCGACCAGGT 908665 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| || || | || ||||| ||| || || || || ||||| ||| | || Sbjct 908664 CATCACCAAGAACTACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGCCC 908605 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | ||| | || || |||||||| || || Sbjct 908604 CGTCGGTCTCGGCGTGCAAGGTCTTGCCGA 908575 >seq2 Length=3675159 Score = 147 bits (162), Expect = 3e-30 Identities = 288/423 (68%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 14360 GCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTC 14419 ||||| || |||||||| ||| | || ||||||| ||| |||||| | || ||| Sbjct 3085443 GCGGACGGCCTCAAGCCCGGTCAGCGCAAGGTGATGTTTGCGTGCTTCAAGCGCAACCTC 3085384 Query 14420 AAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCAC 14479 ||| | || || ||||| || || || | | |||||| | || || |||| |||||| Sbjct 3085383 AAGCAGGAGATCAAGGTCGCCCAGCTCGGTGGTTATGTCTCTGAGAACACTGCCTACCAC 3085324 Query 14480 CATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCA 14539 || ||||||| ||| | | || ||||| | || | ||||| ||| Sbjct 3085323 CACGGTGAAGCGTCCCTCGTCATGACCATTGTCGGTCTCGCTCAAAACTACGTGGGCAGC 3085264 Query 14540 AACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||||| ||||| || || ||||| || ||||||||| || |||||| ||| Sbjct 3085263 AACAACATCAACCTCCTCTCGCCCAACGGTCAGTTCGGTACGCGTATCCAGGGTGGCAAG 3085204 Query 14600 GATGCTTCTCAGACGAGGT-ACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTT 14658 |||||| | ||| | || |||||||||| || | ||||| | ||| || ||||| Sbjct 3085203 GATGCTGC-CAGCCCTCGTTACATTTTCACCAACATCCCCAAGATGACTCACACCATCTT 3085145 Query 14659 TGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACC 14718 | ||| || || | |||||||| || ||| ||||||||| | ||| || || Sbjct 3085144 CCACCCTTCCGACAACGAGCTCCTCAACCACCTGGTCGATGATGGCCAGCGCATCGAGCC 3085085 Query 14719 AGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTAC 14778 || | ||| | || || | || |||||||||||||| || | || |||||||| || Sbjct 3085084 CGAGTACTACCTCCCCACCGTTCCCATGGTTCTCGTGAACGGTTCGGACGGTATCGGAAC 3085025 Query 14779 GGG 14781 || Sbjct 3085024 TGG 3085022 >seq6 Length=2185627 Score = 127 bits (140), Expect = 2e-24 Identities = 264/388 (68%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGG-TTTGACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||||| | ||||| | || ||| ||| |||| |||| || || |||||| Sbjct 94599 AGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGACAAGAACTCG-TCGTTTGCCGAG 94657 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || ||| | || ||||| || ||||| ||||||||||| || || || | | || Sbjct 94658 CGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATC 94717 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| ||||||||||| || || |||||| || || || || || Sbjct 94718 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCG 94777 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || || |||||||||||| || |||||| |||||||| | || | Sbjct 94778 CGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCACCCACCTCCGCCGCCGC 94837 Query 65260 CC-CACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 || ||| | || || ||| || ||| | ||||| |||| ||| ||| ||| ||| Sbjct 94838 CCTCAC-CCAGACACCATCAACATGATCATCCGCGAGGCCGTTGCGATCGAGCAAGAGTT 94896 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || ||||| ||||| |||||||| |||||| | | | |||| | |||| Sbjct 94897 CCTCACAGACGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCGCGCTCATGTGCCAGTA 94956 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||||||| ||| | || || || ||| Sbjct 94957 CATTGAGTTTGTCGCCGACCGCCTGCTC 94984 Score = 105 bits (116), Expect = 8e-18 Identities = 218/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 175183 CGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGAT 175242 |||||| | || || | || || |||| ||||| || || || ||| |||| | Sbjct 1167703 CGCTTCCGCGACGTCGCCGGCATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAAG 1167762 Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCC 175300 || |||||| | || ||| || |||| ||||||||||| || ||||| ||| Sbjct 1167763 TTCCTCAAGGAGCCGCAGAAGTACGA--GAAGCTCGGTGCCAAGATTCCTCGAGGAGCCA 1167820 Query 175301 TTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAAT 175360 | | |||| ||| ||||| || ||||| |||||||| |||| ||| || || Sbjct 1167821 TCTTGTCGGGCCCGCCCGGTACCGGTAAGACGCTCCTCGCAAAGGCCACCGCCGGCGAGG 1167880 Query 175361 CAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 |||| ||||| ||| || | ||| || | | | ||||||||||||||||| ||||| Sbjct 1167881 CAAAGGTCCCCTTCCTCTCGGTG-TCGGGTTCCGAGTTTGTGGAGATGTTTGTCGGTGTC 1167939 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||||| | || ||||| || |||| | ||| || | || || || || || Sbjct 1167940 GGTGCTTCGCGTGTGCGCGACCTGTTTGCGACCGCACGAAAGAACGCGCCCTGCATCATC 1167999 Query 175480 TTCATTGATGAGATTGATGC 175499 ||||| || |||||||| || Sbjct 1168000 TTCATCGACGAGATTGACGC 1168019 >seq3 Length=3502833 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 ||||| || ||||| ||||| |||||||| || || || ||| || || | |||||| Sbjct 1064900 GCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTG 1064959 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208 |||||||| || ||||||| ||||| |||||| || || || || || || || ||| Sbjct 1064960 AAGAAGCGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 1065019 Query 65209 GG 65210 || Sbjct 1065020 GG 1065021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569383743520