Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 104 7e-17 seq8 102 2e-16 seq2 84.2 6e-11 >seq3 Length=3502833 Score = 104 bits (114), Expect = 7e-17 Identities = 245/363 (67%), Gaps = 18/363 (5%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTT---TGTTCTTGTTATTTCTT 302544 ||| || ||||| |||||||| |||| ||| || || | ||||| ||| | Sbjct 403410 GTCCATGCCGTCCTCGCCGTACAGGAA--CTGGATAATGTCACTGTTCGAGTTG---CGG 403464 Query 302545 ACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATA 302604 ||||| || || || | | | | ||||||||| ||||| | || || ||||| Sbjct 403465 ACGGTGCCGTCGTAGCCGACCTTGAGGTCTTCCATGGCCTTGACCAGTCGTCGTTGAATG 403524 Query 302605 TAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCA 302664 |||||||| | || || || || ||||| || ||||| ||||||||||||| || Sbjct 403525 TAACCAGTCTCGGCAGTCTTGACGGCGGTATCGATAAGACCTTCACGACCACCCATGGCG 403584 Query 302665 TGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 |||||||| | ||||| ||| ||| || || | | | ||| |||| || || || || Sbjct 403585 TGGAAGAAGAACTCTTGCGG-CGTGAGACCACGTAGGTACGAGTTCTCGACAAAGCCGCG 403643 Query 302724 CGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 || |||||| | |||| ||| | || || || ||||| | || ||||| | Sbjct 403644 CGACTCGGGTCCGTAGTCGTCCTTTGAGAAATGCGGGAGGGTACGGTGGCGGAAGCCGAA 403703 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA---CGAAATCATCTGCGAAAT 302840 || |||||||| || || || ||||||| || | || ||| ||| |||||||| Sbjct 403704 AGGAATACGCTTGCCTTCGACAATCTGCTGGCCGACACAACCCGA---CATTTGCGAAAT 403760 Query 302841 ATT 302843 || Sbjct 403761 GTT 403763 >seq8 Length=1129179 Score = 102 bits (112), Expect = 2e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || |||||||||| | ||||| || | || | | || || || | || || | Sbjct 475064 GGCCATGAGACCACACTGGTCGCACACGTGCAGGCGGAACGCGTCCGACGACTCGTACAT 475005 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || ||||| ||||| || |||||| || ||||| || || |||||||||||||| Sbjct 475004 GCGCTCCTTGAGGAAGCCAGCAATACCGTGCGAGATCATGCAGTCGCGCTCCATTTCACC 474945 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 |||||| |||||||| || || | | ||||||| | |||||||| || || Sbjct 474944 GAAACGCAGACCACCGTCACGCGAACGACCCTCGACGGGCTGACGCGTCAG 474894 >seq2 Length=3675159 Score = 84.2 bits (92), Expect = 6e-11 Identities = 157/227 (69%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 60123 GAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCA 60182 |||| ||||||| | | |||||||| || | | || || |||||||||||| Sbjct 3085155 GAGTCATCTTGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAGCATCCTTGCCACCCT 3085214 Query 60183 TAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGA 60242 | ||| || || || || ||||| ||| || || || |||||||| ||| ||| Sbjct 3085215 GGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGTTGTTGCTGCCCACGT 3085274 Query 60243 AATTTTGAGCGAGACCAACAATAGCACCATTTAAACTG--GCTTCACCGTGATGATATCC 60300 | |||||||||||||| ||||| | ||| | | ||||||||||| || || | Sbjct 3085275 AGTTTTGAGCGAGACCGACAATGG--TCATGACGAGGGACGCTTCACCGTGGTGGTAGGC 3085332 Query 60301 AGAATGTTCT--GAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 || |||||| || ||||| |||| || || ||||| || || || Sbjct 3085333 AG--TGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTC 3085377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817053127773