Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=2185627 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| ||||| || || | | | Sbjct 20235 ATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAGC 20294 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 20295 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCAG 20354 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| ||||| | | |||| || || ||| Sbjct 20355 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAAC 20414 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| | || | || |||| || || Sbjct 20415 ATTCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTGCGTGGTGG 20461 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 20463 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCC 20522 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 20523 GACACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 20582 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 20583 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAAC 20642 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| |||||||| ||| | || | || | ||||| || Sbjct 20643 ATCCAGAAGGAGTCGACACTTCACCTCGTCCTCCGTCTCCGCGGGGG 20689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897436912120