Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 5e-12 >seq6 Length=2185627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 105097 ACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAGCACTTCAACC 105156 ||||||||||||| || || | | ||||||||||| || ||||||| |||||||||| Sbjct 1016959 ACGTTCACGAGTTTGGAGACAACTCGAACGGCTGCACCTCGGCCGGCGGCCACTTCAACC 1016900 Query 105157 CTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGGCGACCTGGGCA 105216 | || | || ||||| || || |||||| || | |||||||| ||||| |||| Sbjct 1016899 CATTTGGCAAGAACCACGGTGCCCCCACCGCCGCCGACCGCCACGTCGGTGACCTCGGCA 1016840 Query 105217 ATGTC 105221 | ||| Sbjct 1016839 ACGTC 1016835 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || | || || || || ||||| |||| ||| || | Sbjct 20234 AATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAG 20293 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || || || | || || || Sbjct 20294 CGACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCA 20353 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | ||| || || ||||| ||||||| | || || |||||||||| Sbjct 20354 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAA 20413 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 20414 CATTCAGAAGGAGTCCAC 20431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876659021981