Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=2185627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||||| ||| |||||||| || || | | Sbjct 20656 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCA 20597 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| ||||| || || || ||| || || | Sbjct 20596 AAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACA 20537 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | ||| || || || || || || Sbjct 20536 TTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTG 20477 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 20476 ACGAAGATCTGCAT 20463 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 51734 CTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCT 51793 || ||| ||||| | ||| ||||||||||| || ||| | || || ||||||| | Sbjct 1016832 CTTGACGTTGCCGAGGTCACCGACGTGGCGGTCGGCGGCGGTGGGGGCACCGTGGTTCTT 1016891 Query 51794 GCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTC 51853 ||| ||||||||||| |||| ||||| ||||||||||| | |||| || || || Sbjct 1016892 GCCAAATGGGTTGAAGTGGCCGCCGGCCGAGGTGCAGCCGTTCGAGTTGTCTCCAAACTC 1016951 Query 51854 GTGCACGT 51861 ||| |||| Sbjct 1016952 GTGAACGT 1016959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611027228440