Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq2 96.9 4e-15 >seq6 Length=2185627 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || |||||||||||| Sbjct 20689 CCCCCGCGGAGACGGAGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20630 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| ||||| ||||| |||| |||||||| || || || Sbjct 20629 AGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 20570 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | ||||||||||| || || Sbjct 20569 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACC 20510 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || ||||| | || || ||||| || ||||| Sbjct 20509 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 120 bits (132), Expect = 3e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA--GTCGT 134562 |||||||| || ||||| ||||| |||||||||||||| | || | || | ||| | Sbjct 20443 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTC--CGACAGAGTACGGCCGTCCT 20386 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 ||||||| ||||| ||||| || | ||||||||| ||||| || || || || || || | Sbjct 20385 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCT 20326 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 |||| || || || ||| | |||||| || || || ||||||||||| || | Sbjct 20325 GAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCT 20266 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| | || || || || || |||||| Sbjct 20265 TTCCGGTGAGGGTCTTCACAAAGATCTGCATT 20234 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| |||| |||||||| || ||||| ||||| || ||||||||||| Sbjct 20235 TTCCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 20176 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| |||||||| ||||| || || || | |||||||| ||||| | Sbjct 20175 AGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTG 20116 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || || || || || ||||| ||| | ||||| || || || | Sbjct 20115 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGA 20056 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | ||||| || ||||| || ||||| Sbjct 20055 CCTCGAGGGTGATGGTCTTTCCGGT 20031 >seq2 Length=3675159 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| Sbjct 2842967 CCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2843026 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || || | ||||||||| || || || Sbjct 2843027 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGG 2843086 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 2843087 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 2843146 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || || || Sbjct 2843147 TCAAGGGTGATGGTCTTGCCCGT 2843169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398216793080