Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=2185627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 96906 GTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACATTTCAACCCT 96965 || ||||||||||| |||| ||||||||||| |||||||||| || |||||||| Sbjct 1016957 GTTCACGAGTTTGGAGACAACTCGAACGGCTGCACCTCGGCCGGCGGCCACTTCAACCC- 1016899 Query 96966 ACATTGCAA-AATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGATCTGGGCAA 97024 | | |||| || ||||| || |||| |||| || |||||||| ||||| || ||||| Sbjct 1016898 ATTTGGCAAGAACCACGGTGCCCCCACCGCCGCCGACCGCCACGTCGGTGACCTCGGCAA 1016839 Query 97025 CGT 97027 ||| Sbjct 1016838 CGT 1016836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| || | || |||| |||||||| || ||| Sbjct 20431 GTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 20372 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || || || || | |||||| || || |||||| | ||| Sbjct 20371 GCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 20312 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | || || || || || Sbjct 20311 ACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTC 20252 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 20251 TTCACAAAGATCTGCAT 20235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934249812248