Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 199 5e-46 seq6 131 2e-25 seq2 125 9e-24 >seq5 Length=2501492 Score = 199 bits (220), Expect = 5e-46 Identities = 681/1050 (65%), Gaps = 35/1050 (3%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || |||||||| || || | ||| | || | ||| ||||| || || || || Sbjct 908575 TCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 908634 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 ||| ||||| || | || || ||||| ||| || || ||||| |||| ||| Sbjct 908635 TCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTG 908694 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT-TCATTG---ACATACTT 111228 ||||| || || || || | | | || || ||| | || ||| || ||| || Sbjct 908695 GTGATCTCGTGCAGCTTCTTAAAGTC----GTACGACTGGCTCTCAATGTCGACAAACGC 908750 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || ||||| || || |||| ||||| || || ||| || | | |||||| | Sbjct 908751 AGGGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGAT 908810 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 || || || || | |||||| ||| || || || | | || ||||| ||| | Sbjct 908811 GATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCT 908870 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||| || ||||||||||||||| |||| || ||||| ||||| | | ||| || Sbjct 908871 GTTGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGAT 908930 Query 111409 AGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGT 111464 || ||| | | || | | || | |||| ||| ||| | || | ||||||| Sbjct 908931 GGCAAACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCGGCAGCCTCGT 908986 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTT 111522 | | |||||| ||||||||||| | | | |||||| |||||| || || Sbjct 908987 AGCTCTCGTAGAGCTTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGACCGGGGCACTC 909044 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 | | || || | || | ||| | || | |||| || ||||||||||||||||| || Sbjct 909045 GGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGG 909104 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||| || | | ||||| || | | ||| |||| || | || ||||| || Sbjct 909105 GATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 909164 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------T 111696 | || ||||| || | | || |||||||| ||||| || |||| |||| Sbjct 909165 GAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACC 909224 Query 111697 AGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 || | ||| | | | ||| || | || || || || ||||||| | |||| | Sbjct 909225 AGGGCGCTTGTTGCCTCCC----TGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGA 909280 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGC 111813 |||| || | ||||| | || | || || || || || |||||| ||||| Sbjct 909281 GCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAG--CCCTTGGC 909338 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873 | | | |||||||| | || ||||| ||||| ||| ||||| || || || Sbjct 909339 GCGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGT 909398 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933 | | || || | ||||| |||| || ||||| ||||| |||||| || ||||| Sbjct 909399 CTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGA 909458 Query 111934 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 111993 |||||||| || || ||||| || |||||||||||||| | ||||| |||| Sbjct 909459 CGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTA 909518 Query 111994 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 || | ||||| || ||| || || | || ||||||| || |||||||| || Sbjct 909519 ACGCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACC 909578 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||| ||||||| ||||| ||| || Sbjct 909579 AATAGCGACACGCATGATCATGTGCTGGGG 909608 >seq6 Length=2185627 Score = 131 bits (144), Expect = 2e-25 Identities = 267/389 (69%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| || || || | ||| |||||||||||| | |||| | | | |||||| ||||| Sbjct 94984 GAGCAGGCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGAT 94925 Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| | || ||||| ||||| || |||| ||| ||| ||| |||| ||||| | Sbjct 94924 GAGCGAGACG-GGGAGGGCGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGA 94866 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTG-GGTCTATTACGCAAAGTCTTGAAGAGCTCCACG 122658 ||| || ||| || || | ||| || | || | |||||||| | Sbjct 94865 TGATCATGTTGATGGTGTCTGG-GTGAGGGCGGCGGCGGAGGTGGGTGAAGAGCAGGCAG 94807 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || || || || || || || |||||| ||||| Sbjct 94806 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCG 94747 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 94746 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATG 94687 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAA 122837 ||||| || ||||| || | ||| || ||||| || || |||| ||| || || Sbjct 94686 CCCTCGACGGCGGCAAAGGCGATAAGACGCTCGGCAAACGA-CGAGTTCTTGTCAGAAAT 94628 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCT 122866 ||| || | ||||| | |||||||||| Sbjct 94627 CCAGTTGAGCGCCCAGTCGGCCTTCTTCT 94599 Score = 109 bits (120), Expect = 7e-19 Identities = 219/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || |||||||| || ||||||| || || || || | || ||| | |||| || Sbjct 1168019 GCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGTCGCAAACAGG 1167960 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 ||||| || | ||||| ||||| ||||||||||||||||| | | | || ||| Sbjct 1167959 TCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGAACCCGA-CAC 1167901 Query 11750 TG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | || ||| ||||| |||| || || ||| |||| |||||||| ||||| || || Sbjct 1167900 CGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCGTCTTACCGGT 1167841 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATAT 11866 ||| ||| |||| | | ||| ||||| || ||||||||||| |||| || Sbjct 1167840 ACCGGGCGGGCCCGACAAGATGGCTCCTCGAGGAATCTTGGCACCGAGCTTC--TCGTAC 1167783 Query 11867 CTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATC 11926 ||| || | |||||| || | |||| ||| || || || |||||| |||| || Sbjct 1167782 TTCTGCGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGCCTCGTCCATG 1167723 Query 11927 CCCTCAACATCACTGAAGCG 11946 || | || || | |||||| Sbjct 1167722 CCGGCGACGTCGCGGAAGCG 1167703 >seq2 Length=3675159 Score = 125 bits (138), Expect = 9e-24 Identities = 281/422 (67%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || || |||||||| || | || |||||||||||||| || | || || | ||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 181745 || || || ||| | ||||||||| ||| || |||||||| | || || ||| Sbjct 3085082 TCGGGCTCGATGCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAAGGG 3085141 Query 181746 TCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAGCG 181805 | ||||| || ||| | ||||| | || ||||| || || | | | ||| Sbjct 3085142 TGGAAGATGGTGTGAGTCATCTTGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAGCA 3085201 Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || |||||| || ||||||||| || ||||| ||| || ||||| |||||| Sbjct 3085202 TCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGTTG 3085261 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCG 181925 || || |||| | || | || ||||| | |||||| |||||||| Sbjct 3085262 TTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTTCACCG 3085321 Query 181926 TGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCT 181985 |||||||| || | || || | ||||| | | | ||| || ||||| || || | Sbjct 3085322 TGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCTGC 3085381 Query 181986 TTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 |||||||| | |||||| ||| ||||||| || | ||| |||||||| || ||| Sbjct 3085382 TTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGTCC 3085441 Query 182046 GC 182047 || Sbjct 3085442 GC 3085443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031772338400