Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 232 8e-56 seq6 172 7e-38 seq2 132 6e-26 seq3 122 1e-22 >seq5 Length=2501492 Score = 232 bits (256), Expect = 8e-56 Identities = 684/1048 (65%), Gaps = 31/1048 (3%) Strand=Plus/Plus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || |||||||| || ||||| || | ||||| || | ||| || || ||||| Sbjct 908575 TCGGCAAGACCTTGCACGCCGAGACCGACGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 908634 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 ||| ||||| || | ||| | ||| ||| | || || ||||| |||||||| Sbjct 908635 TCCTCGACGGGGTAGTAGTTCTTGGTGATGACCTGGTCGAGGTTCTTGGTCACAACCTTG 908694 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAG 118704 ||||| || || ||||| | | || | |||| |||| | |||| || || Sbjct 908695 GTGATCTCGTGCAGCTTCTTAAAGTCGTACGACTGGC--TCTCAATGTCGACAAACGCAG 908752 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | ||||| || || ||||| || || || | | ||| || | | |||||| || | Sbjct 908753 GGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGA 908812 Query 118765 TTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 | || ||||| | ||| || ||| |||||||| | || || || || ||||| ||| Sbjct 908813 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCTGT 908872 Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884 | || |||||||| |||||| | || || ||||| || |||| || ||| || | Sbjct 908873 TGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCCTCGAGGATGG 908932 Query 118885 CCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT------CTTCCTCG 118937 | ||||| | || | || | ||| ||| || |||| | ||||| Sbjct 908933 CAAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCGGCAGCCTCG 908985 Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 || | |||||| |||||||| || | | || | ||| || || || Sbjct 908986 TAGCTCTCGTAGAGCTTCTCAAACTCCTCCGAGTGGACGTCGGCGAGACCGGGGCACTCG 909045 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||| | ||| | || | |||| || ||||||||||| ||||| ||| Sbjct 909046 GCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGGTCGGGG 909105 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 |||||||| || ||||||| || ||| |||| | || || | || || || || Sbjct 909106 ATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 909165 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || | ||||| | | || |||||||| || || ||||| | |||| | || Sbjct 909166 AGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAACGCACC- 909224 Query 119178 TTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | | || || |||||| || || | |||||||||| | | || ||| Sbjct 909225 --AGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGGAGC 909282 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 119289 || || | |||||| | || | ||| || || || ||| ||||| | | |||| | Sbjct 909283 ATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGC 909340 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 | | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | Sbjct 909341 GAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTCT 909400 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 |||| || ||||||| || || |||||||| |||| | |||| ||| ||||| || Sbjct 909401 TGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACGACG 909460 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 |||| || || ||| ||||| ||||||||||| ||||| | ||||||| |||| || Sbjct 909461 ACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGTAAC 909520 Query 119470 CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529 | ||||| || ||| || || | || ||||| || ||||| ||||| | Sbjct 909521 GCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATACCAA 909580 Query 119530 TCGAGACCCGCATAAACATGTATTGGGG 119557 | | ||| ||||| | ||||| ||||| Sbjct 909581 TAGCGACACGCATGATCATGTGCTGGGG 909608 >seq6 Length=2185627 Score = 172 bits (190), Expect = 7e-38 Identities = 352/515 (68%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 || ||| |||||||||||||| ||| || | | ||| |||||||||| || ||| Sbjct 95085 ACGCGCGACTCGAAGAAGTTTGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAT 95026 Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGAGAC 129855 ||||| ||||| |||| || | | || | | ||| || || || | ||| Sbjct 95025 GGGTTTGCAGAGTTGTAAATCT-TGTCGTTGCCGAGCGCGACGAGCAGGCGGTCGGCGAC 94967 Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAGCG 129914 |||||||||||| |||| | ||| |||||| |||||||| | || ||||| | Sbjct 94966 AAACTCAATGTACTGGCACATGAGCGCGGCGTTCATGCCGATGAGCGAGACG-GGGAGGG 94908 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 |||| || |||| | | ||| || | || || || || | ||| || ||||| | Sbjct 94907 CGTCTGTGAGGAACTCTTGCTCGATCGCAACGGCCTCGCGGATGATCATGTTGATGGTGT 94848 Query 129975 CCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGAC 130034 | | | ||| | ||| | ||||||| |||||| || |||||||| Sbjct 94847 CTGGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGAC 94788 Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| || |||||||| || || |||||| ||||| ||||||||||| ||||||| Sbjct 94787 CCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCT 94728 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | |||||| || | ||| ||||| ||||||||||| ||||| || || || | Sbjct 94727 TGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAGG 94668 Query 130155 CAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGCCCACTGC 130213 | | |||||||| ||||| || || | |||| | || ||| || | |||||| | Sbjct 94667 CGATAAGACGCTCGGCAAACGA-CGAGTTCTTGTCAGAAATCCAGTTGAGCGCCCAGTCG 94609 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| |||| ||| || || | | ||| ||||| Sbjct 94608 GCCTTCTTCTTGATGCAGGGAATGTTCTCAATCGC 94574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAAC 14292 ||| |||| ||||||||| || |||||||| | ||| || || || | || || Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 |||| | || ||||| | | ||||||||||| ||||||||||||||||| | || Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 14353 GGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | | ||| | || ||||||||| || | || || ||| |||| |||||||| | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG--GGCACCACGTGGGATCCTGGCACC 14466 |||| || || || || || ||| ||| ||| || || || ||| ||||||| Sbjct 1167850 TCTTACCGGTACCGGGCGGGCC--CGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq2 Length=3675159 Score = 132 bits (146), Expect = 6e-26 Identities = 287/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 || || ||||| || || | ||||||||||||||||| |||| || || | ||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 178945 TCTGGTTCAATCGCAC-GCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCGG 179003 || || || || || | | || ||||| ||| | ||||| | || ||| || Sbjct 3085082 TCGGGCTCGAT-GCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAAGG 3085140 Query 179004 ATCAAAGATTTTACGAG-CATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 179062 | ||||| | ||| |||| ||| || || ||||| ||||| | | | | Sbjct 3085141 GTGGAAGATGGTGTGAGTCATCT-TGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAG 3085199 Query 179063 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATAT 179122 |||| ||||||||| || |||||| || || ||||| ||| ||||| ||||| | Sbjct 3085200 CATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGT 3085259 Query 179123 TGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCAC 179182 |||| |||| ||||| | || | |||||| || ||||||| |||||| Sbjct 3085260 TGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTTCAC 3085319 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 |||| ||||| || | || || | ||||| | | | ||| || ||||| ||||| | Sbjct 3085320 CGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCT 3085379 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGT 179302 ||||||||| | |||||||||| |||||||||| | || ||||||||||||| Sbjct 3085380 GCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGT 3085439 Query 179303 CGGC 179306 | || Sbjct 3085440 CCGC 3085443 >seq3 Length=3502833 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || |||||||| || || |||||| || || ||||||| || |||||| Sbjct 1065021 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCACGCATGAGTCCGCGCTTC 1064962 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || ||| || |||||||| |||||||||||||| ||||| |||||| Sbjct 1064961 TTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAGAAGATCCCCTCGACACAAGCGAAC 1064902 Query 130154 GC 130155 || Sbjct 1064901 GC 1064900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434975817240