Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 165 9e-36 seq6 140 4e-28 seq2 140 4e-28 seq3 98.7 1e-15 >seq5 Length=2501492 Score = 165 bits (182), Expect = 9e-36 Identities = 674/1052 (64%), Gaps = 39/1052 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || || ||||| || || || ||||||| || Sbjct 909608 CCCCAGCACATGATCATGCGTGTCGCTATTGGTATCCACGGCGACAACATTGAGAAGGTG 909549 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || || ||| || ||||| | || |||| ||||| | |||||||||||| Sbjct 909548 CTCGACACGTACAACCTCATGTCGGAGCGTTACTTCACCCACGCGTCGCCAACCCTCTTC 909489 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || ||||| ||||| ||||| || |||||| ||||| ||| Sbjct 909488 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGCCATGAAGGACGAC 909429 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 909428 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCTGGT 909369 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 104519 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 909368 GGTATCGGTCTCCACATCCACAACATTCGCGCCA--AGGGCTCGTACATTGCCGGTACCA 909311 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || | || | ||||| | || ||||| |||| | ||||||| || || || | Sbjct 909310 ACGGCTACTCGAACGGTATCGTCCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTACG 909251 Query 104580 TAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | | ||| | | | ||| || | |||| |||| || ||||| ||| Sbjct 909250 ----TCGACCAGGGAGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGG 909195 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || | | || ||||| || | || ||||| || | ||||||| ||| Sbjct 909194 CACGCCGACGTGTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGC 909135 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || ||||||| |||||||||||| || || || ||||||||| | || |||| Sbjct 909134 GCT--CGTGACCTCTTCTACGCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGG 909077 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | ||| | ||| | || || | | || || |||||| |||| | | Sbjct 909076 CCGACGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACT 909017 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG------AAGGTCGGGCGACTG 104864 ||||||||||| || ||| | ||||||| | | ||||| ||| Sbjct 909016 CGGAGGAGTTTGAGAAGCTCTACGAGAGCTACGAGGCTGCCGGCAAGGGTCGCAAGACCA 908957 Query 104865 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | || |||| || | ||| || || ||| || | || |||||||||||| Sbjct 908956 TCAAGG-CCCAGAAGC-----TCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTG 908903 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG--AGT--AATCAAAAGAATTTG 104980 || | |||||| ||||| |||| ||| |||| || ||| || || || | | Sbjct 908902 GTCCCTTCATGCTCTACAAGGACG-CTG---CCAACAGCAAGTCCAACCAGCAGCACCTC 908847 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || |||||| ||||| ||||| || || ||| | || | | | | || ||| Sbjct 908846 GGCACCATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAG 908787 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100 || || || ||||| || || || || ||||| || ||| || |||| || Sbjct 908786 GTCGCCGTCTGCAACCTGGCCTCGATTGCCCTCCCTGCGTTTGTCGACATTGAGAGCCAG 908727 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 | | || | | | || || ||||| | || || ||| ||||| ||||| || Sbjct 908726 TCGTACGACTTTAAGAAGCTGCACGAGATCACCAAGGTTGTGACCAAGAACCTCGACCAG 908667 Query 105161 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 || || | || | |||||||| ||| ||||| || || ||| | ||||| Sbjct 908666 GTCATCACCAAGAACTACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGC 908607 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 || | |||||||| || || ||||| || || Sbjct 908606 CCCGTCGGTCTCGGCGTGCAAGGTCTTGCCGA 908575 >seq6 Length=2185627 Score = 140 bits (154), Expect = 4e-28 Identities = 169/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 94789 |||| |||| || || | ||||| || || ||||| | || ||| || | |||| Sbjct 94583 AACA-TTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGACAAGAA 94641 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | ||| | ||||| ||||| || |||| ||||| || ||||| ||||||||||| | Sbjct 94642 CTCGT-CGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGG 94700 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | || || | | || | |||||||||||||| ||||||||||| |||||| ||||| Sbjct 94701 GCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCT 94760 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||| ||||| || |||||||| |||||| || ||||| Sbjct 94761 CCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGC 94806 Score = 114 bits (126), Expect = 2e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| | ||| |||||||| || ||||||| |||||| || || | || ||| Sbjct 1168029 CTTTCCGATGGCGTCAATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTTCGTGCGGT 1167970 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||| || || || |||||| || || ||||| ||||||||||||||||| | | Sbjct 1167969 CGCAAACAGGTCGCGCACACGCGAAGCACCGACACCGACAAACATCTCCACAAACTCGGA 1167910 Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | ||| | || ||||||||| || | || || || |||| ||||| || | Sbjct 1167909 ACCCG-ACACCGAGAGGAAGGGGACCTTTGCCTCGCCGGCGGTGGCCTTTGCGAGGAGCG 1167851 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| ||||| ||| |||| | || ||| ||||| ||||||||||| || Sbjct 1167850 TCTTACCGGTACCGGGCGGGCCCGACAAGATGGCTCCTCGAGGAATCTTGGCACC 1167796 >seq2 Length=3675159 Score = 140 bits (154), Expect = 4e-28 Identities = 290/427 (68%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || || |||||||| || | ||||||||||||||||||||| | || || | |||| | Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || ||||| ||| | | ||||| || ||| | |||||| | | || | | ||||| Sbjct 3085082 TCGGGCTCGATGCGCTGGCCATCATCGACCAGGTGGTTGAGGA---GCTCGT-TGTCGGA 3085137 Query 168398 ----TCAAAGATCTTTCGGG-CATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 168452 | ||||| | | | |||||| | || || || || || || | | | Sbjct 3085138 AGGGTGGAAGATGGTGTGAGTCATCTTGGG-GATGTTGGTGAAAATGTAACGAGGGCTGG 3085196 Query 168453 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 |||||||| |||||| || ||||||||| |||||||| ||| || || |||| Sbjct 3085197 CAGCATCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGA 3085256 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTT 168572 | ||||| |||| ||||| | || | |||||| || |||| || ||| Sbjct 3085257 TGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGTCATGACGAGGGACGCTT 3085316 Query 168573 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 168632 ||||||||||||| ||| | ||||| | |||| | | | | ||| || || || |||| Sbjct 3085317 CACCGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCT 3085376 Query 168633 CATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 168692 | | |||||| || | |||||| || |||| |||||||| || |||||||| | Sbjct 3085377 CCTGCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGC 3085436 Query 168693 CATCCGC 168699 | ||||| Sbjct 3085437 CGTCCGC 3085443 >seq3 Length=3502833 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || || || ||||| ||||| |||||||| ||||| || ||| || || | ||| | Sbjct 1064900 GCGTTCGCTTGTGTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTG 1064959 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||||| || ||||||| || ||| ||||||||||||||| ||||| || |||||| Sbjct 1064960 AAGAAGCGCGGACTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAG 1065019 Query 94936 GG 94937 || Sbjct 1065020 GG 1065021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260588567960