Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 129 2e-24 seq6 129 2e-24 seq2 84.2 7e-11 >seq10 Length=842962 Score = 129 bits (142), Expect = 2e-24 Identities = 399/615 (65%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | | || |||||||| | ||||| || || | Sbjct 512177 CCCGAGGAGATCTCGTCCATGGTCCTCATCAAGATGAAGGAGACCGCTGAGGCTTACCTT 512118 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || || | || || || ||||| || || || | |||||| Sbjct 512117 GGTGGCACCGTCTCGAAGGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCGCAGCGT 512058 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | |||||| || | | || || | || || || || Sbjct 512057 CAGGCCACCAAGGACGCCGGTACCATTGCCGGTCTTGACGTCCTCCGTATCATCAACGAG 511998 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || || || || || || || || || || | | || || || || || Sbjct 511997 CCTACCGCCGCCGCTATCGCCTACGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTT 511938 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || ||||| || | ||||||||||| || || || || || || || |||| ||||| Sbjct 511937 CTCATTTTCGACCTTGGTGGTGGTACCTTCGACGTGTCGCTCCTCACCATTGAGGAGGGC 511878 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || ||||| || ||||||||||| || || ||||| || Sbjct 511877 ATCTTCGAGGTCAAGGCTACCGCCGGTGACACCCATCTTGGTGGTGAGGACTTTGACAAC 511818 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 |||||||| || ||| || || ||||| |||| || | || || Sbjct 511817 CGTCTCGTCGACCACTTTAAGCTGGAGTTCAAGCG-CAAGAACAAGAAGGACATCTCGTC 511759 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || | || | || || || | |||||||| || ||||| ||||| || | || Sbjct 511758 CAACGCTCGTGCCCTCCGCCGTCTCCGCACTGCGTGCGAGCGTGCCAAGCGCACCCTCTC 511699 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | | || ||||| ||||| || || || || || || | || |||| | Sbjct 511698 GTCTGCCGCTCAGACCTCGATTGAGATCGACTCGCTCTTCGACGGTATCGACTTCTACAC 511639 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || ||||| || || || || | || ||| || || | | || ||||| Sbjct 511638 CTCGATCACCCGTGCCCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGA 511579 Query 350131 TCCTGTGGAAAAAGT 350145 || || || || || Sbjct 511578 GCCCGTTGAGAAGGT 511564 >seq6 Length=2185627 Score = 129 bits (142), Expect = 2e-24 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| ||||| || ||||| || || || Sbjct 20465 CATACCACCACGCAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTC 20406 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| ||||| ||||| || || Sbjct 20405 CGACAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGG 20346 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 || || || || || |||||||| || ||| || ||||| || || | || | | Sbjct 20345 TGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTCACATTGTCGATGGTGTCGCTAGACT 20287 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || |||| ||||||||||| || || || ||||| ||||||||| Sbjct 20286 CGACCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 20234 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || ||||| || ||||| || || || || || || || | || || ||||| Sbjct 20674 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCC 20615 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| ||||||||||| || || || ||| Sbjct 20614 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 20555 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || ||||| || |||| || || | || || || || || | ||| Sbjct 20554 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 20495 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 20494 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 >seq2 Length=3675159 Score = 84.2 bits (92), Expect = 7e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 2842964 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 2843023 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 2843024 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGG 2843083 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || || | || || | || Sbjct 2843084 GGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 2843143 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| || | ||||| || || || Sbjct 2843144 ACCTCAAGGGTGATGGTCTTGCCCGTGAG 2843172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253836988287