Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 315 8e-81 seq2 190 2e-43 seq3 84.2 2e-11 >seq5 Length=2501492 Score = 315 bits (348), Expect = 8e-81 Identities = 537/777 (69%), Gaps = 14/777 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||||||||| ||| || | || | || |||||| Sbjct 909595 TCATGCGTGTCGCTATTGGTATCCACGGCGACAACATTGAGAAGGTGCTCGACACGTACA 909536 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 909535 ACCTCATGTCGGAGCGTTACTTCACCCACGCGTCGCCAACCCTCTTCAACGCCGGTACCC 909476 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||||||||| ||||| || || || |||||||| |||||||| ||||||| Sbjct 909475 CCCACCCCCAGATGTCGTCGTGCTTTCTCGTCGCCATGAAGGACGACTCGATTGACGGCA 909416 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || || || ||||||||| | |||||||||||| ||| Sbjct 909415 TCTACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCTGGTGGTATCGGTCTCC 909356 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | ||| | || || || ||| | || || || |||||| | | | | Sbjct 909355 ACATCCACAACATTCGCGCCAAGGGCTCGTACATTGCCGGTACCAACGGCTACTCGAACG 909296 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||||| || | || ||| ||||| |||||| ||||||| || Sbjct 909295 GTATCGTCCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTACGTCGACCAGGGAGGCA 909236 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || |||||||||||||||||||||| |||||||||||| | | || | Sbjct 909235 ACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCTTGGCACGCCGACGTGTTCGACT 909176 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || || ||| || || | || ||| | ||| |||||||| || ||| Sbjct 909175 TCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGTGACCTCTTCTAC- 909117 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| ||||| || ||||| |||||| | || ||| |||| || ||| ||| Sbjct 909116 GCTCTCTGGATCCCCGACCTTTTCATGAAGCGTGTCGAGGCCGACGGCGACTGGACCCTC 909057 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| |||||||||||| ||| | ||| || ||||||||| | || | Sbjct 909056 ATGTGCCCTGCCGAGTGCCCCGGTCTCGCCGACGTCCACTCGGAGGAGTTTGAGAAGCTC 908997 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || ||| || | |||| ||| |||| ||||||| | || Sbjct 908996 TACGAGAGCTACGAGGCTGCCGGCAAGGGTCGC------AAGACCATCAAGGCCCAGAAG 908943 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| ||| |||||| || |||| ||||| || || | |||| ||||||| Sbjct 908942 CTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACTGGTGGTCCCTTCATGCTCTACAAG 908883 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || | | |||| ||| ||||||| || || ||||| |||||| ||| |||| Sbjct 908882 GACGCTGCCAACAGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAAC 908826 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| |||||| ||| || |||||| | | |||||| | | |||||| | Sbjct 908078 CTCAAGGCAATTTACAAGACTGTTTGGGAGGTGTCGCAGAAGGCTGTCATTGACCTTGCG 908019 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || ||||| |||| |||||||||||| ||||| || |||||| | || ||| ||| Sbjct 908018 GCCGACCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCT 907959 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || | | || | | |||||||||||| ||||| |||||| ||||||||||| || Sbjct 907958 TCGTTCTCGCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGACTCAAGACTGGC 907899 Query 55907 ATGTACTATCTGCGGACCCGC 55927 |||||| || || |||||| Sbjct 907898 CAGTACTACCTCCGTACCCGC 907878 Score = 109 bits (120), Expect = 6e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 |||||| | ||||| ||||| | || |||||||| |||||| ||| ||||||| Sbjct 908720 GACTTTAAGAAGCTGCACGAGATCACCAAGGTTGTGACCAAGAACCTCGACCAGGTCATC 908661 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 |||||| |||||||| || | ||| ||||| |||| | || ||||| ||| || Sbjct 908660 ACCAAGAACTACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCGTC 908601 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | |||| || || || | ||||||| ||||||| ||| | |||||||||||||| Sbjct 908600 GGTCTCGGCGTGCAAGGTCTTGCCGACACCTTCATGGCTCTCCGCATGCCCTTCGACTCG 908541 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATC-TTCAGTCGCATCTACTTTGCAGCGCTCGA 55335 | || || || |||||| | ||| || || | ||||||| || || ||||| Sbjct 908540 CCTGCCGCCCGTGAGCTTAACCTCAAGATCTTTGAGAC-CATCTACCACGCTGCCCTCGA 908482 Query 55336 GGAGTCGTG 55344 | |||||| Sbjct 908481 GTCGTCGTG 908473 >seq2 Length=3675159 Score = 190 bits (210), Expect = 2e-43 Identities = 316/452 (70%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||||||||| || | ||| |||| |||| ||| || ||| || | |||| || Sbjct 3085022 CCAGTTCCGATACCGTCCGAACCGTTCACGAGAACCATGGGAACGGTGGGGAGGTAGTAC 3085081 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | || || || | || ||||| | | | ||||| || Sbjct 3085082 TCGGGCTCGATGCGCTGGCCATCATCGACCAGGTGGTTGAGGAGCTCGTTGTCGGAAGGG 3085141 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| ||| | | ||| | | | | |||||||||||||||| ||| |||||| Sbjct 3085142 TGGAAGATGGTGTGAGTCATCTTGGGGATGTTGGTGAAAATGTAACGAGGGCTGGCAGCA 3085201 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||||||||| | |||||||||||| || || | ||| | |||||| | |||| Sbjct 3085202 TCCTTGCCACCCTGGATACGCGTACCGAACTGACCGTTGGGCGAGAGGAGGTTGATGTTG 3085261 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAGGCTCGCCTCAC 117449 ||| |||||| |||||||||| | |||||| || | || |||| ||| |||| Sbjct 3085262 TTGCTGCCCACGTAGTTTTGAGCGAGACCGACAATGGT--CATGACGAGGGACGCTTCAC 3085319 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509 | ||||| || || || | ||| | || || || | ||||| || ||||| || || Sbjct 3085320 CGTGGTGGTAGGCAGTGTTCTCAGAGACATAACCACCGAGCTGGGCGACCTTGATCTCCT 3085379 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 | | ||||| ||||| ||| ||| | |||||||||||||||| ||||| || || | Sbjct 3085380 GCTTGAGGTTGCGCTTGAAGCACGCAAACATCACCTTGCGCTGACCGGGCTTGAGGCCGT 3085439 Query 117570 CCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600 |||| || ||||| || ||||| || |||| Sbjct 3085440 CCGCGAC-CGAGGGAATGGAACGGATGTTGTC 3085470 Score = 131 bits (144), Expect = 2e-25 Identities = 209/298 (70%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | |||||| |||||||||||||| | ||||| || ||||| Sbjct 3085175 GTGAAAATGTAACGAGGGCTGGCAGCATCCTTGCCACCCTGGATACGCGTACCGAACTGA 3085234 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| ||||||||||| ||||||| ||||||| | || ||||| | | ||| Sbjct 3085235 CCGTTGGGCGAGAGGAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCGACA 3085294 Query 152149 ATCGTGCCCTG--CAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || | || || ||||||||||||||| || || || | ||| | || || | Sbjct 3085295 ATGGT--CATGACGAGGGACGCTTCACCGTGGTGGTAGGCAGTGTTCTCAGAGACATAAC 3085352 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | | | ||| || ||||| || ||| | | ||||| ||||| || || | |||| Sbjct 3085353 CACCGAGCTGGGCGACCTTGATCTCCTGCTTGAGGTTGCGCTTGAAGCACGCAAACATCA 3085412 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||||||| || || | |||||| | || ||||| ||||| || |||| Sbjct 3085413 CCTTGCGCTGACCGGGCTTGAGGCCGTCCGCGACCGAGGGAATGGAACGGATGTTGTC 3085470 Score = 109 bits (120), Expect = 6e-19 Identities = 261/386 (68%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 118012 GAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTA 118071 ||| ||||||||||| |||||||| ||||| ||||||||||||||| ||| ||||||| Sbjct 3085909 GAGACCCTTGATATGCGAACCGTCGTGATCCTGATCGGTCATGATCATGAGGTGGCCGTA 3085968 Query 118072 CCGTAAATCTCTCAGG-GAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130 || | | || | || || || | | || | ||| ||||| |||| || Sbjct 3085969 ACGGAGGG-TGTCGGTCGACTTGTACTCGGTGTTGTGCTTGAGACCGAGAATCTGGCGAA 3086027 Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190 ||| || ||| || | | | | ||| | | | || || || |||||| | Sbjct 3086028 TGTTCTGAATCTCCGTGTTCTTCATGATCTGCTCGTGGTTTGCCTCACGGACGTTGAGGA 3086087 Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCT--CAAG-CCGG 118247 |||| || || || || ||||| ||||| ||||||| || || || | || |||| Sbjct 3086088 GCTTTCCACGAAGCGGGAACACACCAAAGGTGTCACGACCTTGAATGCCACCGAGACCGG 3086147 Query 118248 CAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGC 118307 | ||| || ||||| || |||||||| || || | ||| || ||||||| ||| | | Sbjct 3086148 AGACAGCGAGAGCCTTGGCGGAGTCACCTTCAGTGAGAATGAGGGTGCACT-GGTTC-GA 3086205 Query 118308 GATGAGT--ACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTT 118365 | || || ||||||||| ||||| || || ||||| | | || | || || | Sbjct 3086206 GTTGCGTCCACCGGCCCAGTTAGCGTCCTCGAGCTTGGTGATACCGGCGATACGAGTGCG 3086265 Query 118366 TTTGGACCCATCTGTCTTCTTGAGCT 118391 |||| || || ||||||||||||| Sbjct 3086266 CTTGGCACCGTCCGTCTTCTTGAGCT 3086291 >seq3 Length=3502833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 |||||| |||| ||||| |||||||||||||| ||||||||| ||| || ||| ||| Sbjct 1064985 AGGCCACGCATGAGTCCGCGCTTCTTCAACCAGAAGATGGCAGCGAACGAGCCAGAAAAG 1064926 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT-TGCGCGAACGG 74911 ||||| || |||||||| || || || | | ||| |||| |||||| Sbjct 1064925 AAGATCCCCTCGACACAAGCGAACGCTATCAACCGTGTGCG-GAACGG 1064879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215801634200