Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=4238441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 228/342 (67%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30175 || |||||||| |||| || | || |||| ||| ||||||| | |||| ||| Sbjct 1869349 TTCGGGTTCCACGCGCTCAACACAATACGCCGGTCGGTGGGGTTGTGCTTGATCTTGTCG 1869408 Query 30176 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTA 30234 | | | || ||| ||||||||| | |||| || || | | || || | ||| Sbjct 1869409 ATCACTTCCCTCATCTGGTCCACCCCCTTGCCCGTATAATCGTCATCGCAAGTGCC-GTA 1869467 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 ||| || |||||||||| |||||||||||| ||||| ||||||| ||| ||||| || Sbjct 1869468 CTCGGCGCCGAAATGCCGCCACTGGAACCCATACACGGGTCCCAAGTCACCCTCCCTCCG 1869527 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 ||| | | || | |||| | | | || | | |||||| ||||||| || | | Sbjct 1869528 GTGGCCCAGCCCAACCCTGTCGAGATACTCGCGGCTTCCGTTGCCGTCCCAAATATGAAT 1869587 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 |||||| | ||| | | || ||| | || ||||||||| || |||||||| Sbjct 1869588 GTCCTTCTTCGCGAGGACGGCGCCGTCGGTGCAGCCCGAGACGAACCAGAGGAGCTCCTC 1869647 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | |||| | ||||| | ||| || |||||||| || Sbjct 1869648 GATGACGCCGCGGGTGAAGACGCGCTTCGTGGTGAGGAGCGG 1869689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310256394668