Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 >seq6 Length=2185627 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||| |||||||| || || || || || || |||| || || || Sbjct 20437 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGC 20378 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||| ||||| || || | ||||||||||| ||| || Sbjct 20377 TTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTC-CTGAATCTT 20319 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTACC 34679 | || || | || ||| ||||| ||| || || | || ||||| || || Sbjct 20318 GCTCTTCACATTGTCGATGGTG---TCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCC 20262 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || |||||||| |||||||| Sbjct 20261 GGTGAGGGTCTTCACAAAGATCTGCAT 20235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729488762757