Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq2 89.7 4e-13 >seq6 Length=2185627 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||||| || || || ||||| Sbjct 20463 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCC 20522 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || ||||| ||||| || ||||| || || || || Sbjct 20523 GACACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 20582 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || || || | ||||| |||||| Sbjct 20583 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAAC 20642 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 20643 ATCCAGAAGGAGTCGAC 20659 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | |||||||| || || || | | Sbjct 20235 ATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAGC 20294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| || || || |||||||| || Sbjct 20295 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCAG 20354 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | || | || || |||||| Sbjct 20355 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAAC 20414 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || | || | ||| |||| ||||| || Sbjct 20415 ATTCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTGCGTGGTGGTAT 20464 >seq2 Length=3675159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || ||||| || || | || ||| | || || | ||||| Sbjct 2843172 CTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 2843113 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || ||||| || || || || |||||| | || | ||||||| Sbjct 2843112 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATCTTCGCCGGC 2843053 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | ||| | || || |||||||| || |||||||||||| | Sbjct 2843052 AAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 2842993 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | ||| | || ||||| || Sbjct 2842992 CACCTCGTCCTCCGTCTCCGTGGTGGTAT 2842964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918242342080