Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=4238441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 |||||||||||||||||| || ||| || | | ||| ||||| |||| | ||| Sbjct 1869347 CCTTCGGGTTCCACGCGCTCAACACAATACGCCGGTCGGTGGGGTTGTGCTTGATCTTGT 1869406 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899 ||||||| | | || ||||||| | |||| |||| ||| || | |||| | | Sbjct 1869407 CGATCACTTCCCTCATCTGGTCCACCCCCTTGCCCGTATAATCGTCATCGCAAGTGCCGT 1869466 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 |||| || || || || | |||||||||||| || || || |||||||| |||||| Sbjct 1869467 ACTCGGCGCCGAAATGCCGCCACTGGAACCCATACACGGGTCCCAAGTCACCCTCC 1869522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449 |||||| |||||||| || || || |||||||||||| | || || || || ||||| | Sbjct 1869522 GGAGGGTGACTTGGGACCCGTGTATGGGTTCCAGTGGCGGCATTTCGGCGCCGAGTACGG 1869463 Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 |||| | || ||| |||| |||| | ||||||| || | | |||||||||| Sbjct 1869462 CACTTGCGATGACGATTATACGGGCAAGGGGGTGGACCAGATGAGGGAAGTGATCGACAA 1869403 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 | |||| ||||| ||| | | || ||| || |||||||||||||||||| Sbjct 1869402 GATCAAGCACAACCCCACCGACCGGCGTATTGTGTTGAGCGCGTGGAACCCGAAGG 1869347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262237504880