Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 176 1e-38 seq2 165 2e-35 seq8 140 8e-28 >seq6 Length=2185627 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || || | || || | ||||| Sbjct 20674 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCC 20615 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||||||||||| || ||||||||| Sbjct 20614 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 20555 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || || |||||||||||||||||| Sbjct 20554 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 20495 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 20494 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 174 bits (192), Expect = 4e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||||||||| || |||||||| || |||| ||||| | ||| || Sbjct 20218 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGTCCGTCC 20159 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 20158 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCC 20099 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 20098 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTC 20039 Query 211083 TTTCCCGTGAG 211093 ||||| || || Sbjct 20038 TTTCCGGTCAG 20028 Score = 174 bits (192), Expect = 4e-38 Identities = 169/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||||||||| || || ||||| || |||| || || | || || Sbjct 20446 AGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCC 20387 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || |||||||| || || ||||| || || | || ||||||||| Sbjct 20386 TCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 20327 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 || ||||| ||||| || ||||||||||| ||| || ||||||||||| ||| Sbjct 20326 TGAATCTTGCTCTTCACATTGTCGATGGTGTC---GCTAGACTCGACCTCGAGAGTAATC 20270 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| ||||| ||||| | ||||||| Sbjct 20269 GTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 20234 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | ||| || || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 19834 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 19775 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || ||||||||||||||||| || ||||| ||||||||||| || || ||| Sbjct 19774 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGACGACTCGACC 19715 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| ||||| || ||||| Sbjct 19714 TCGAGGGTGATGGTCTTGCCGGTGAG 19689 >seq2 Length=3675159 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 2842982 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2843041 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||||||||| || || |||||||| || | || ||||||||| Sbjct 2843042 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2843101 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || ||||| || ||||| ||| Sbjct 2843102 TGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 2843161 Query 211083 TTTCCCGTGAG 211093 || |||||||| Sbjct 2843162 TTGCCCGTGAG 2843172 Score = 136 bits (150), Expect = 9e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| |||||||| ||||| || ||| Sbjct 1356129 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 1356188 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 1356189 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAG 1356248 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || |||||||| ||||| ||||| ||||| || Sbjct 1356249 GACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 1356283 >seq8 Length=1129179 Score = 140 bits (154), Expect = 8e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| |||||||| ||||| || ||| Sbjct 496525 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 496466 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||| | || ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 496465 TCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAG 496406 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || |||||||| ||||| ||||| ||||| || Sbjct 496405 GACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAG 496371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151569302585