Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 5e-12 >seq6 Length=2185627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || |||| || ||||| Sbjct 20437 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCGAGCTGC 20378 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGAT-TTT 39200 ||||| ||||| ||||||||||||||||||| || | | ||| |||||| || || Sbjct 20377 TTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGAATCTTG 20318 Query 39201 CTGTT-TGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || || | |||| | || ||||| ||||| || || | || || | ||||| | Sbjct 20317 CTCTTCACATTGTCG--ATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTTCCGG 20260 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || |||||||| ||||| Sbjct 20259 TGAGGGTCTTCACAAAGATCTGCAT 20235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545448182477