Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 125 2e-23 seq2 123 6e-23 seq29 113 1e-19 seq22 102 2e-16 seq8 102 2e-16 >seq6 Length=2185627 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| |||| || || | ||||| Sbjct 20674 AGGACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCC 20615 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| || |||||||| Sbjct 20614 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 20555 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||| ||||| || | || || || | ||||||||| Sbjct 20554 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 20495 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 20494 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 120 bits (132), Expect = 7e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| |||||||| || || |||| ||||| || | | || Sbjct 20227 CGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTG 20168 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || |||||||| || || || Sbjct 20167 CGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGGATGCCC 20108 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| || | || || || | Sbjct 20107 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGG 20048 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 20047 GTGATGGTCTTTCCGGTCA 20029 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || || | ||||| || | || ||| | || || Sbjct 20446 AGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCC 20387 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || |||||||| || || |||||||| || ||||| |||||||| Sbjct 20386 TCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 20327 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| | || || || | || |||||| Sbjct 20326 TGAATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTC 20267 Query 225682 TTGCCCGT 225689 || || || Sbjct 20266 TTTCCGGT 20259 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || |||||||| || || || ||| Sbjct 19825 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 19766 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || |||||||||||||| | || || || | ||| Sbjct 19765 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGACGACTCGACCTCGAGGGTG 19706 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 19705 ATGGTCTTGCCGGT 19692 >seq2 Length=3675159 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | | || | || || Sbjct 2842982 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2843041 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || ||||| || || || || |||||||| Sbjct 2843042 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2843101 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| || || || | ||||| ||| Sbjct 2843102 TGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 2843161 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 2843162 TTGCCCGT 2843169 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| || || || || ||| Sbjct 1356147 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 1356206 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| |||| ||||| || | ||| Sbjct 1356207 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTG 1356266 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 1356267 ATGGTCTTGCCCGT 1356280 >seq29 Length=1025 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 959 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 901 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 900 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 857 Score = 111 bits (122), Expect = 4e-19 Identities = 114/147 (78%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 294 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 353 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 354 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 413 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 ||||||||||||||| || |||||| Sbjct 414 AACGCGTTAGCTTAAT--ATCTAAAAA 438 >seq22 Length=1986 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 118 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 59 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 58 GTAACATGATGTATAGGGTCTGACAC 33 >seq8 Length=1129179 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| || || || || ||| Sbjct 496507 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCC 496448 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| |||| ||||| || | ||| Sbjct 496447 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTG 496388 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 496387 ATGGTCTTGCCCGT 496374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530756900126