Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 156 9e-33 seq2 143 6e-29 seq8 120 6e-22 seq4 89.7 1e-12 >seq6 Length=2185627 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||||| || |||||||| || || || || |||||| Sbjct 20653 TCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAG 20594 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || |||||| ||||| ||||||||||| || ||||| | || || | Sbjct 20593 ATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 20534 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||||||||||||||| || || | ||||| ||| Sbjct 20533 TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACG 20474 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 20473 AAGATCTGCAT 20463 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||| || || || ||||||||||| | Sbjct 20462 ACCACCACGCAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 20403 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||||||||| | ||| || ||||| || Sbjct 20402 CAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGG 20343 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| || ||| ||||| || || | ||||| ||||| || |||| Sbjct 20342 GATACCCTCCTTGTCCTGAATC-TTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGA 20284 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | |||||||| |||||||| || || | ||||| || || ||||||||| Sbjct 20283 CCTCGAGAGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 20234 Score = 140 bits (154), Expect = 7e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | ||| || || |||||||||||||| | Sbjct 20233 CCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 20174 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || ||||| ||||| | || || ||||| || Sbjct 20173 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGG 20114 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 20113 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 20054 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| || |||| Sbjct 20053 TCGAGGGTGATGGTCTTTCCGGTCA 20029 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || ||||| || ||||| || || || ||||| ||||| | || || | Sbjct 19845 TGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 19786 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || || ||||||||||| |||||||| | || ||| | ||||| ||||| | Sbjct 19785 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTG 19726 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| ||||| ||||| ||||| || || Sbjct 19725 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 19692 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || | |||||| | || || || || || || || || || | Sbjct 94922 CTCATCGGCATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTG 94981 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| ||||| || |||| || | || ||||| ||||| |||| ||||||||| Sbjct 94982 CTCGTCGCGCTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAG 95041 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGA 230377 | || || |||||||| || | ||||||||||| Sbjct 95042 ATGATCTCGCTCCAGGGCAAGGCAAACTTCTTCGA 95076 >seq2 Length=3675159 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 2842966 ACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2843025 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||| | ||| || |||||| || Sbjct 2843026 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGG 2843085 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 2843086 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 2843145 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| ||||| Sbjct 2843146 CTCAAGGGTGATGGTCTTGCCCGT 2843169 Score = 123 bits (136), Expect = 5e-23 Identities = 200/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | | || ||| ||||||||||| || | | || ||| ||| Sbjct 3085172 TTGGTGAAAATGTAACGAGGGCTGGCAGCATCCTTGCCACCCTGGATACGCGTACCGAAC 3085231 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| | |||| || ||| ||||||||||| || ||||| | ||||| | | Sbjct 3085232 TGACCGTTGGGCGAGAGGAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGAGCGAGACCG 3085291 Query 273897 ACGATAGTCCCCTGA--AGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 || || || | ||| ||||| | || |||||||| ||||| ||| || | || || Sbjct 3085292 ACAATGGT--CATGACGAGGGACGCTTCACCGTGGTGGTAGGCAGTGTTCTCAGAGACAT 3085349 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACA 274014 |||||| || ||| || ||||| | || | | | ||| |||||||| | | ||| Sbjct 3085350 AACCACCGAGCTGGGCGACCTTGATCTCCTGCTTGAGGTTGCGCTTGAAGCACGCAAACA 3085409 Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 |||||| ||||| |||||||| || || ||||||| ||||| Sbjct 3085410 TCACCTTGCGCTGACCGGGCTTGAGGCCGTCCGCGACCGAGGGAAT 3085455 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| |||||||| ||||| || || || ||||| ||||| | || || | Sbjct 1356127 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 1356186 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || || ||||||||||| |||||||| | || ||| | ||||| ||||||| Sbjct 1356187 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCG 1356246 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | || || ||||| ||||| ||||| ||||| Sbjct 1356247 AGGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 1356280 >seq8 Length=1129179 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| |||||||| ||||| || || || ||||| ||||| | || || | Sbjct 496527 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 496468 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || || ||||||||||| |||||||| | || ||| | ||||| ||||||| Sbjct 496467 GGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCG 496408 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | || || ||||| ||||| ||||| ||||| Sbjct 496407 AGGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 496374 >seq4 Length=3284570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 ||| ||||||| |||||||| | ||||||| ||| ||| |||||| || | Sbjct 2356366 GTCCTCACCGGTCTGGTAACGCCAGAGCATGTACTCGAGGGGAGTCGAGTCAAGGTGCTG 2356425 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAA-GACGCATATTTGGATGCTTCC 316285 ||||||||||||||||||||||| || |||||| ||| |||| | || || ||||||| Sbjct 2356426 GTCGATGTGGTGGAAAGCGTGCTGGGCAACGTAACCAATGACG-AGGTTAGGGTGCTTCC 2356484 Query 316286 AAACGCTACCG 316296 | ||| ||||| Sbjct 2356485 AGACGGTACCG 2356495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738811070966