Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq2 107 1e-18 >seq6 Length=2185627 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || |||||||| || | || || |||| || Sbjct 20443 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCGTCCTCG 20384 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||||||||| || | || | ||| ||||| ||| Sbjct 20383 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGA 20324 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||||||| || || ||||| | |||||||||||| Sbjct 20323 ATCTTGCTCTTCACATTGTCGATGGTGTCGCTAGACTCGACCTCGAGAGTAATCGTCTTT 20264 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| ||||| ||||| Sbjct 20263 CCGGTGAGGGTCTTCACAAAGATCTGCAT 20235 Score = 132 bits (146), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| |||| || || | || || Sbjct 20671 ACGAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCG 20612 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 20611 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 20552 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || ||||||| || || ||||| | || ||||||| Sbjct 20551 ATCTTCGACTTGACATTGT--CGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCT 20494 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 20493 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 20463 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | || || |||||||| ||| |||||| ||||||||||| || Sbjct 20237 CATTCCACCGCGGAGGCGCAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 20178 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| ||||| ||||| | |||||||| || | Sbjct 20177 CGAGAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 20118 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | | | |||||||| | || || Sbjct 20117 TGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTC 20058 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||||| | || || |||||||| || ||| Sbjct 20057 GACCTCGAGGGTGATGGTCTTTCCGGTCAGG 20027 >seq2 Length=3675159 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 2842985 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 2843044 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | || | || ||||| ||| Sbjct 2843045 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 2843104 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | ||| || ||||| | || || ||||| Sbjct 2843105 ATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTG 2843164 Query 44309 CCCGTGAGG 44317 ||||||||| Sbjct 2843165 CCCGTGAGG 2843173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990272765893