Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq2 136 1e-26 seq8 131 4e-25 >seq6 Length=2185627 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| |||||||| || || ||| Sbjct 20466 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCCGAC 20525 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || ||||| |||||||| Sbjct 20526 ACGATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 20585 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || |||| || ||| || Sbjct 20586 CGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGTACGCTGTCCGACTACAACATC 20645 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 20646 CAGAAGGAGTCGACACTTCACCTCGT 20671 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || |||||||||||||| || || ||||||||||| |||||||| Sbjct 20028 CTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAACGTCAAG 20087 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| Sbjct 20088 TCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAGCGCCTCATCTTCGCCGGC 20147 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || ||| | || || | || || ||| |||| || || || || || Sbjct 20148 AAGCAGCTCGAGGACGGACGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACTCTT 20207 Query 178122 CATCTTGT 178129 || || || Sbjct 20208 CACCTCGT 20215 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| || |||||||||||||| |||||||| Sbjct 19689 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCAGACACCATCGACAACGTCAAG 19748 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| Sbjct 19749 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCCGGC 19808 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || ||| | || || |||| || Sbjct 19809 AAGCAGCTCGAGGACGGACGCACCCTCTCCGACTA 19843 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || ||||| ||||| ||||| || |||||||| || ||| Sbjct 20238 CAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACTCTCGAGGTCGAGTCTAGC--- 20294 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || || || |||||||||||||| || || ||||| || |||||| Sbjct 20295 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCCGACCAG 20354 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || |||||||| ||||| || |||||||| || || | ||||| | || || ||| Sbjct 20355 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGTCGGACTACAAC 20414 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || || || || || Sbjct 20415 ATTCAGAAGGAGTCCACTCTTCACCTCGT 20443 >seq2 Length=3675159 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||| ||||| || ||| ||||||||||| |||||||| Sbjct 2843172 CTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 2843113 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| || |||||||||||||| Sbjct 2843112 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATCTTCGCCGGC 2843053 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || || | || || | || || ||| |||| || || || || || Sbjct 2843052 AAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 2842993 Query 178122 CATCTTGT 178129 || || || Sbjct 2842992 CACCTCGT 2842985 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1356283 CTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 1356224 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| Sbjct 1356223 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGC 1356164 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || || | || ||| | || || Sbjct 1356163 AAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 1356129 >seq8 Length=1129179 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 496371 CTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 496430 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || |||||||| |||||||| || || ||||||||||| Sbjct 496431 TCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTCATCTTCGCCGGC 496490 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || || | || ||| | || || Sbjct 496491 AAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 496525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730752738626